Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01449 ATGGCACTATTCTCTCCGTTGAAGTTATTGCCGGCGGTGCTGGCTCTGTTTCTGGCGTTGAGCCAGAAACAGAGTCTCTGTTCGACGCTCGAGAGCGAAGGTTTGGCGCTGTTGGCGTTGAAGGAGAGTGTGGTGACAGACCCGCAGGGGGCTTTATCAAGCTGGAGTGGCGAAATGGATCCATGCTCGTGGTTCGGTGTGGAGTGCTCTTCTCACGGTAATGTCGTGACCTTGAATTTGAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAGTTGGAATGCTGGCTCACATAAAATCAATCATTTTGCGCAACAATTCTTTCTTTGGAGAAATCCCTGAGGAGATCATATACTTACAGGAGTTGGAAGTCCTTGACTTGGGACATAACAACTTCAGTGGATCACTTCCATTTGACCATGGCAATATGCCATCCCTGACCACTCTTCTATTGGACAACAATTCCCATCTGACCAACTTAACTTCAGAGCTGTATAAGCTCAAGATGAATTCTGAATTTCGTGCTAATGAAGAACAACTAACTGGTGTCACCACTACTAGAGAAGCATATGTTGGCAGATGTAGTTTATGGCACATTGGCCAACATGGGGATAGAGCAGACCGGAAACTTCTCAAAGTAGCAAATGTTGCTAGTACACCCAAAATCCAAAGGCATGTTAACCAAGGGATACTTAAACAATTAGCATCGCATTTCCCTTTTGCATTACCACCAAATTTTGAGCCTTTCTCATCACCACCATCATTTTCACCGTCAGAAAGTCCCTCATATTCGCCATCACCTTCTCCCTCAGATAGTTTTTTCACTCCTTCCCCCTCTCCTTCGCCTGAAGTGTTACTAACTCCAGACGTATCACCACCAGTAAACACTCCTCTCACTGCGCCTACACCACCAGTTAATTGGGTTCCAGCACCTAACCCTTCTCCATTTTCTACCCAAGGGAACACGTACAATTCCAATCAAATACAGCACTCGGCAATAATCTGGTCTGCGGTTGGGGGTTTCTCTTTACTGATTTTGATGTCAGCCATTACTTTTGCTTGCTTCCGAAGTAGGAAGGTTGTGACTGTTAAACCTTGGTCCACAGGATTGAGTGGCCAGCTGCAGAAAGCCTTTGTAAAAGGTGTGCCAAGTCTCAAACGAGGAGAAATTGAAGCAGCTTGTGAATATTTCAGCAACATTATCGGTTCGCTTCCTGATGGAACTGTGTATAAGGGGACTCTCTCCAGCGGAGTCGAGATAGCTGTAGCATCCTCTGCAGTGAACACAGCTCAAAAATGGTCAAAAAGCATGGAAGCTCAATTCCGAAATAAGATAGCAACGTTATCTAGAGTGAACCACAAGAATTTTGTAAATCTAATTGGGTACTGTGAAGAGAATAAGCCGTTCTCAAGAATGATGGTGTTTGAGTACGCTCCAAATGGAACACTCTTTGAGCATATACACATTAGAGAAGCAGAAGAACTAAATTGGACGATGAGAATGAGGATAGCTATGGGAATAGCCTACTGCCTAGAATATATGCATGACCTAAAACCCTCCATTGCCCATAGAAACCTGCAATCTTCATTTATATACCTTACTGAAGATTATGCTGCTAAAATATCAGACCTTAGCTTATGGAATGACATGTGTGCTGCAAAGAATGGGTCTGCAACCACACAACTCCTGGAAACATCATCAGCAGATGCCAAGGACAATGTTTACAGCTTCGGAATAATATTGTTTGAGTTGATTACGGGGAAAATCCCCATGGCCGGGAACAACGAACTTCTTGCAGATTGGGCAGCAGAATATTTAAGGTGGGGGAAATCCTTGAGAGATGTTGTGGATCCAAGACTGAACTCTTTGCAGGAAGAAGAGATTGAAGAATGGTCTGAAGTGATGAGAAACTGTGTACAACCAGATCGAGAGAAAAGGCCAACTATGAAAGATGTTACATCTAGACTCAAGGAAATAACAGCTATGGGACCTGATGGAGCAAATCCAAAGGCATCACCACTTTGGTGGGCAGAAATGGCAATTACGTCCACTGATTCAAGTTGA 2067 0.4407 MALFSPLKLLPAVLALFLALSQKQSLCSTLESEGLALLALKESVVTDPQGALSSWSGEMDPCSWFGVECSSHGNVVTLNLKDLCLEGTLAPEVGMLAHIKSIILRNNSFFGEIPEEIIYLQELEVLDLGHNNFSGSLPFDHGNMPSLTTLLLDNNSHLTNLTSELYKLKMNSEFRANEEQLTGVTTTREAYVGRCSLWHIGQHGDRADRKLLKVANVASTPKIQRHVNQGILKQLASHFPFALPPNFEPFSSPPSFSPSESPSYSPSPSPSDSFFTPSPSPSPEVLLTPDVSPPVNTPLTAPTPPVNWVPAPNPSPFSTQGNTYNSNQIQHSAIIWSAVGGFSLLILMSAITFACFRSRKVVTVKPWSTGLSGQLQKAFVKGVPSLKRGEIEAACEYFSNIIGSLPDGTVYKGTLSSGVEIAVASSAVNTAQKWSKSMEAQFRNKIATLSRVNHKNFVNLIGYCEENKPFSRMMVFEYAPNGTLFEHIHIREAEELNWTMRMRIAMGIAYCLEYMHDLKPSIAHRNLQSSFIYLTEDYAAKISDLSLWNDMCAAKNGSATTQLLETSSADAKDNVYSFGIILFELITGKIPMAGNNELLADWAAEYLRWGKSLRDVVDPRLNSLQEEEIEEWSEVMRNCVQPDREKRPTMKDVTSRLKEITAMGPDGANPKASPLWWAEMAITSTDSS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01449 688 FunFam Inactive receptor-like serine/threonine-protein kinase 370 478 - -
Vimu1g01449 688 SUPERFAMILY Protein kinase-like (PK-like) 391 657 IPR011009 -
Vimu1g01449 688 Pfam Protein tyrosine and serine/threonine kinase 401 657 IPR001245 GO:0004672|GO:0006468
Vimu1g01449 688 ProSiteProfiles Protein kinase domain profile. 396 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01449 688 Pfam Leucine rich repeat 98 155 IPR001611 GO:0005515
Vimu1g01449 688 PANTHER PROTEIN MALE DISCOVERER 2 12 685 - -
Vimu1g01449 688 SUPERFAMILY L domain-like 27 172 - -
Vimu1g01449 688 MobiDBLite consensus disorder prediction 272 288 - -
Vimu1g01449 688 FunFam Nuclear pore complex protein NUP107 30 187 - -
Vimu1g01449 688 Gene3D Phosphorylase Kinase; domain 1 364 478 - -
Vimu1g01449 688 Gene3D Ribonuclease Inhibitor 29 212 IPR032675 -
Vimu1g01449 688 MobiDBLite consensus disorder prediction 252 308 - -
Vimu1g01449 688 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vimu1g01449 688 Gene3D Transferase(Phosphotransferase) domain 1 479 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01449 Vimu-Chr1 12451326 12456369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01449 376 660 Receptor kinase-like Gene Family AT4G31110 33.876 2.75e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vimu1g01449 PK_Tyr_Ser-Thr 6.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01449 - - gmx:100779427 1063.52