Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01442 ATGGCTGCAGCTTTAGAGTGCTGGTCCAGCCGCGCCACCGCCGCCGCCGACGATGACACGGTGGAGCAGGTTCTCATGCGTACCCATCACAGATCTGAAGGCCCGGCTTCCACCCCTAAAGACCCCTCCTCCATCCCCAACGTCCACAAGAAGTTCCAGAAGCTCACCCGCAACGTCTCCGAAGCCATAGCCTCATTCAGAAATTCTCTAAACCTCGATTCACCTCCTTCTTCCAAAGCTGATGCCTCTTCGCGGAAACTTGCCTGGGGAAGTGTCGTTCGCAACCTCACTCAGCTCTACCCCGGAAGCCAACTCCCCGAGAAACTTATGTCCAACATTCGCAAGCATTATGATTCCTTGCCCCTCAGGTCCCAGAAAATTAATGCCGCCCAAAGTTTTTATCTTTACTCGCAGTTTCGGTTTTTGTGGTGTTCTGGGGAAGTTCTAAATTCTGTACGTTTGGAGGCTTTGATGTGTCTGGAGCTGATCGTGGATGGAAACTTTGACATTGCTGAGTTTGATATGAAGGATGTGTTTCTTCACATAAAGTTGATGGAGCAAGCTTCGGAGACTGACCAGCCTGCTATTTTAATTCAAGAGGATTGTGATGAAGAGGTTCAAGGTTCTGCTCTGAAGCTCACGTTTGCTTGCAACTCTCCGATTTCCTGGCCTGCGATGTCTGGGGCATTGGACAGTTCCTCCATTTGCTGCAAGAGGATGCAGATCTTTGAGAAGAAGGGTTTCACCTTGGGAGTTGTGCTTCTTGTGGTTCTGTCTGGGCATGATAAGTTGGTGAGGACCAGGGTTGAAAATGCTTTGAAGTTTGCAATGAAGAAGCCTAAAACTGGTGCTGTGAAGCTCCCCTTCGGGCTCTGTGGGTGCCAGGAGGAAAATTCCAAAGGGAGAGATCTTGTGGAGATTGAAGAAGAATACGGTGATGGTTACCGTGGAAAGGAGTTTGAGAATTCAAGTCAAAGGATTCAGCTTCAGGTGCCTCTGCCTTCTTCATCTTTCATTGTGTCAGTGGATGAATGGCAGACCATACAGTCAGGTGGGGATGAGATTGAGAAATGGTTGTTGAACTCAGATAGCGTGGAGTTTGTTGAGCAGATTGGGCCAACTTCGTACAAGGGAGTTTATATGGGGAAGAGGGTTGGGATTGAGAAGCTGAAGGGGTGTGATAAAGGGAATTCTTACGAGTTTGAGCTCCACAAGGATCTGCTGGAACTCATGACTTGTGGTCATAGGAACATTCTGCAGTTCTGCGGTATTTGCGTGGATGATAATCATGGGTTGTGTGTGGTGACCAAGTTCATGGAAGGTGGATCTGTTCATGACCTGATGTTGAAGAACAAGAAGCTGCAGAATAAGGATATTGTGAGGATTGCAGTTGATGTGGCAGAAGGGATCAAGTTTATGAATGACCACGGTGTTGCATATAGAGACCTTAATACACAGAGAATTCTGTTGGATAGGCATGGGAATGCTTGCTTGGGAGATATGGGTATAGTCACTGCCTGCAAAAGTGTTGGAGAAGCTATGGAGTATGAAACTGATGGTTATAGGTGGCTAGCTCCTGAGATAATAGCAGGGGACCCAGAGAATGTGACAGAGACATGGATGAGTAATGTGTATAGTTTTGGGATGGTAATTTGGGAGATGGTAACTGGTGAGGCAGCATACTCTTCATTTTCACCTGTTCAAGCAGCAGTGGGCATTGCTGCATGTGGCCTTAGACCAGAAATCCCAAAAGACTGCCAACAAACTCTAAAATACATTATGACAAAATGCTGGAACAACGCCCCTTCCAAACGCCCTCAGTTCTCTGAAATCTTAGCCATATTGCTGCGACCAAACTGCAACAACAGATAA 1872 0.4722 MAAALECWSSRATAAADDDTVEQVLMRTHHRSEGPASTPKDPSSIPNVHKKFQKLTRNVSEAIASFRNSLNLDSPPSSKADASSRKLAWGSVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPLRSQKINAAQSFYLYSQFRFLWCSGEVLNSVRLEALMCLELIVDGNFDIAEFDMKDVFLHIKLMEQASETDQPAILIQEDCDEEVQGSALKLTFACNSPISWPAMSGALDSSSICCKRMQIFEKKGFTLGVVLLVVLSGHDKLVRTRVENALKFAMKKPKTGAVKLPFGLCGCQEENSKGRDLVEIEEEYGDGYRGKEFENSSQRIQLQVPLPSSSFIVSVDEWQTIQSGGDEIEKWLLNSDSVEFVEQIGPTSYKGVYMGKRVGIEKLKGCDKGNSYEFELHKDLLELMTCGHRNILQFCGICVDDNHGLCVVTKFMEGGSVHDLMLKNKKLQNKDIVRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDRHGNACLGDMGIVTACKSVGEAMEYETDGYRWLAPEIIAGDPENVTETWMSNVYSFGMVIWEMVTGEAAYSSFSPVQAAVGIAACGLRPEIPKDCQQTLKYIMTKCWNNAPSKRPQFSEILAILLRPNCNNR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01442 623 ProSiteProfiles Protein kinase domain profile. 365 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01442 623 PRINTS Tyrosine kinase catalytic domain signature 586 608 IPR001245 GO:0004672|GO:0006468
Vimu1g01442 623 PRINTS Tyrosine kinase catalytic domain signature 436 449 IPR001245 GO:0004672|GO:0006468
Vimu1g01442 623 PRINTS Tyrosine kinase catalytic domain signature 542 564 IPR001245 GO:0004672|GO:0006468
Vimu1g01442 623 PRINTS Tyrosine kinase catalytic domain signature 472 490 IPR001245 GO:0004672|GO:0006468
Vimu1g01442 623 SUPERFAMILY Protein kinase-like (PK-like) 343 615 IPR011009 -
Vimu1g01442 623 Gene3D Transferase(Phosphotransferase) domain 1 358 618 - -
Vimu1g01442 623 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 132 615 - -
Vimu1g01442 623 Pfam Protein tyrosine and serine/threonine kinase 400 614 IPR001245 GO:0004672|GO:0006468
Vimu1g01442 623 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01442 Vimu-Chr1 12320710 12325019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01442 348 615 MAP Kinase Kinase Kinase AT2G17700 33.455 2.78e-51 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Vimu1g01442 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01442 - - pvu:PHAVU_008G258400g 1087.02