Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01432 ATGAGTGGTAATTGTTCACCCTGTGCTTCCTGCAAGCTGCTGAGACGTCGTTGCTCCCAGAATTGCCTCTTTGCTCCTTATTTTCCTGCCAATGATCTTCACAAGTTTGCCATGGTGCACAAGGTCTTTGGATGCAAGAATCTTACAAAAATGCTAAAGGATGTTCCTGTTGAGAAAAGAGAAGATGTAGTGAAGAGTTTAGTTTATGAGGCAAATGCAAGAGTCAGAAATCCTGTGTATGGTTGTGTTGGAATAATATCTAACCTAGAAATTCAAGTTTCTGAGTTACAAACGCAGCTTGCAGTAGCTCAGACAGAGATTCTTACCATGAAAATGCAGCAAGCATTTACCTTCAACAATGGTGACATATCACCATGA 378 0.4074 MSGNCSPCASCKLLRRRCSQNCLFAPYFPANDLHKFAMVHKVFGCKNLTKMLKDVPVEKREDVVKSLVYEANARVRNPVYGCVGIISNLEIQVSELQTQLAVAQTEILTMKMQQAFTFNNGDISP 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01432 125 Coils Coil 86 106 - -
Vimu1g01432 125 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vimu1g01432 125 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vimu1g01432 125 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01432 Vimu-Chr1 12197916 12199718 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01432 6 120 AS2 family AT2G30130 66.957 5.81e-55 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g01432 LOB 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01432 - - qsa:O6P43_020159 170.244