Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01430 ATGGAGAAGGTGGTGTGTGTCACCGGCGGCAGCGGCGCCATCGGTTCATGGCTCGTGCACCTCCTTCTGAACCGCGGCTACACTGTCCACGCCACCGTCCAAAATCTCAACGATGAGGCCGAGACGAAGCATCTAGAAGCCTTGGATGGAGCGCCGGCGCGCCTGCGCCTCTTCCAGATGGAACTCCTCCACTACGATTCCGTCCTCGCCGCAGTGTGTGGCTGCGCCGGCGTGTTCCACGTCGCCTCTCCTTGTACTGTTGAACAAGTCCAGGACCCTCAGAAGGAGCTTCTGGACCCGGCGATAAAGGGCACCTTGAACGTGCTAACGGCAGCGAAAGAAGCAGGGGTACGTCGCGTGGTGGTCACGTCCTCCACCTCCGCGATTGTTCCGAGCCCTAATTGGCCCGGTGACGTTCCCAAGAGGGAGAACTGCTGGACTGACGTTGAATTTTGCAAGCAAAAGGGGTTGTGGTATCCATTGTCGAAGACTTTGGCCGAGAAGGCAGCTTGGGATTTTGCAAAGGAGACTGGGTTAGATGTTGTTGTAGTGAATCCTGGCAATGTGGTGGGTCCTGTTGTTGCACCGAGGCTTAATGCAAGCATGGTCATGTTTGTGCGCCTACTTCAAGGAGTGTCCTTGGATATTGGGAATGTGAACCGGAGAAGTGCTAAAATTCAGTGGCAATGTTACCAAAGTATCTTTGAACCACAAGAGAAAAGTAGATTGCATGGTTGTGATGATACATATGAAAACTTTTTTATGGGATCGGTCCACTTTAAGGATGTAGCATTGGCACATATTTTGGTGTATGAGAATAAATCTGCAGTTGCTATCTCTCACTACGGTGATTTTGTGGCCAAAGTTGCTGAACTTTATCCAGAGTACAATGTGCCAAAGATGCCACGAGATACCCAACCAGGAGTATTGAGAGTGAAGGATGGATCAAAGAAACTTATGGATTTGGGTTTGCAATTCATTCCTATGGAGAAGATTATAAAGGATGCTGTAGAGGACTTGAAGAGAAAAGGGTTGATTTCATAA 1044 0.499 MEKVVCVTGGSGAIGSWLVHLLLNRGYTVHATVQNLNDEAETKHLEALDGAPARLRLFQMELLHYDSVLAAVCGCAGVFHVASPCTVEQVQDPQKELLDPAIKGTLNVLTAAKEAGVRRVVVTSSTSAIVPSPNWPGDVPKRENCWTDVEFCKQKGLWYPLSKTLAEKAAWDFAKETGLDVVVVNPGNVVGPVVAPRLNASMVMFVRLLQGVSLDIGNVNRRSAKIQWQCYQSIFEPQEKSRLHGCDDTYENFFMGSVHFKDVALAHILVYENKSAVAISHYGDFVAKVAELYPEYNVPKMPRDTQPGVLRVKDGSKKLMDLGLQFIPMEKIIKDAVEDLKRKGLIS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01430 347 CDD FR_SDR_e 5 324 - -
Vimu1g01430 347 Gene3D - 1 347 - -
Vimu1g01430 347 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 337 - -
Vimu1g01430 347 Pfam NAD dependent epimerase/dehydratase family 5 204 IPR001509 -
Vimu1g01430 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 340 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01430 Vimu-Chr1 12176681 12178821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01430 3 347 Monolignol Biosynthesis Gene Families AT5G58490 65.909 2.83e-168 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01430 - - gmx:100803241 508.834