Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01427 GCTGGTCAACATCGATTCTTGGATTTTGAAATGGGTGGTACTTCTTCACCTTGTGCTTCGTGCAAGTTGTTGAGGCGCCGTTGCTCTCCGGATTGCATCTTTGCTCCTTATTTTCCATCCAACGATCTCTGCAAGTTTGCCATGGTGCACAGGGTCTTTGGCTGCAGCAATATCACCAAAATTCTAAAGAATGTTCCCGTTGAGCAAAGAGGAGATGCAGTGAGGAGTTTAGTTTATGAAGCAAATGCACGAATTAAAAACCCTGTTTATGGTTGTGTTGGAATCATATCTAAGCTAGAAACTCAAGTTTCTGAGTTACAAATGCAGCTTGCAGTAGTTGAGGAAGAAATTCTCAGCATAAAAATGCAGCAAGAATTTATCTTCACCAATGGCGGTACATAA 402 0.4179 AGQHRFLDFEMGGTSSPCASCKLLRRRCSPDCIFAPYFPSNDLCKFAMVHRVFGCSNITKILKNVPVEQRGDAVRSLVYEANARIKNPVYGCVGIISKLETQVSELQMQLAVVEEEILSIKMQQEFIFTNGGT 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01427 133 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Vimu1g01427 133 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Vimu1g01427 133 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 123 - -
Vimu1g01427 133 Coils Coil 96 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01427 Vimu-Chr1 12147060 12147556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01427 11 125 AS2 family AT2G30130 69.828 6.52e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g01427 LOB 6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01427 - - sind:105163937 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01427 1 12147060 12147556 Vimu1g01427 1 12147060 12147556 ECH
Vimu2g02120 2 15898625 15899521 Vimu1g01427 1 12147060 12147556 ECH
Vimu2g02120 2 15898625 15899521 Vimu1g01427 1 12147060 12147556 PCT