Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01426 ATGGAGGACACTGCCTTGTTCGGAAAGTACGAGCTCGGGTGCGTTATCGGGTGCGGCGCCTTCGCGAAGGTGCACTATGCGCGCAACATGCAGATGGGACAGAGCGTGACCGTGAAAATCATCAACAAGAAGAAGATAAATAGAACGGGTATCGCCAGTAACGTGAAGCGTGAAATCAGTATCATAAGCAGGCTCCACCACCCCAACATCGTGCGTCTCCATGAGGTTCTTGCTACCAAAAACAATTTTCTTCATGATGGACTTCGTGTGGCGCGGGGGAGAGCTCTTCTAGAAGATCTCGAAGAGTCGCTTCTCGGAGGATCTCAGCCCTAA 333 0.5165 MEDTALFGKYELGCVIGCGAFAKVHYARNMQMGQSVTVKIINKKKINRTGIASNVKREISIISRLHHPNIVRLHEVLATKNNFLHDGLRVARGRALLEDLEESLLGGSQP 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01426 110 Pfam Protein kinase domain 11 83 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01426 110 SUPERFAMILY Protein kinase-like (PK-like) 5 82 IPR011009 -
Vimu1g01426 110 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Vimu1g01426 110 ProSiteProfiles Protein kinase domain profile. 10 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01426 110 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 83 - -
Vimu1g01426 110 FunFam Aurora kinase A 2 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01426 Vimu-Chr1 12145905 12146237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01426 3 84 CBL-interacting serine-threonine protein kinases AT2G30360 62.651 1.07e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu1g01426 Pkinase 5.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01426 - - gsj:114377188 130.568