Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01424 ATGGTAGGAGCACATGCATTATTATTATATTATTATGCAATTACAAAGTCCAAAGGTGAGAGAAAAGATAAGATGGGATGTACTTCAGTACTCAGAAGCCCCAAGAAAGAAGAACACGAGGTACCAGATGCTATCACTTCCTTATTACCAAATTCTAACCAATCTTACACCTATGAAGATTTCAATATTTTGGACGAAATGGAAGGGATCTTCAACTCCAAAGAGGAGCAAAAGTTACTGCAACAAGACTCTTCGAGTGGCGAATTCCATTGGGATTTCATGGAATGGGAGGAGTTTGCTCCCATTGAAGAGGAAGGAGAAGACGAAAACGAAGGAAAAGAGCAGGTAACAGAGAGCATGAGGCAGTACCCTTTTGAGGAGAAGCAGATAAAGAGAGAAATGGATGATGAGAAGATGGTGGCTTTGAACTTGAACTTGAACTATCAAGAGGTTTTGGATGCATGGTCTAACCGAGGCTCTCTTTGGGCTGATGACTGTTCTCTTTCCTTGGCAACCAACAATGGCTACTATAATGGAGAAGTGCCAGTGTTGGAAGAAGAGAGAGCGAGAAGGGAAGCAAGTGTTCTTAGATACAAAGAGAAACGTCAGAACAGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGGAAACTAAATGCTGATAAAAGACCAAGAATCAAGTATGCTCATTTTGTTTGTTTTGTTATGAAAGCAGCTTTTCCGATATTTTTGTTGTAG 738 0.3997 MVGAHALLLYYYAITKSKGERKDKMGCTSVLRSPKKEEHEVPDAITSLLPNSNQSYTYEDFNILDEMEGIFNSKEEQKLLQQDSSSGEFHWDFMEWEEFAPIEEEGEDENEGKEQVTESMRQYPFEEKQIKREMDDEKMVALNLNLNYQEVLDAWSNRGSLWADDCSLSLATNNGYYNGEVPVLEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKYAHFVCFVMKAAFPIFLL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01424 245 Pfam CCT motif 191 227 IPR010402 GO:0005515
Vimu1g01424 245 ProSiteProfiles CCT domain profile. 191 233 IPR010402 GO:0005515
Vimu1g01424 245 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01424 Vimu-Chr1 12094389 12095584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01424 135 232 C2C2-CO-like Transcription Factor Family AT1G73870 44.915 2.56e-17 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu1g01424 CCT 1.1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01424 - - aprc:113847792 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01424 1 12094389 12095584 Vimu1g01424 1 12094389 12095584 ECH