Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01411 ATGGCGACGGATGCTAGGGCGAAGTTCCAGAACGCAGATTTCCGCCCCGATTTTCACGCGGACCTAAAGGTGTCAACTCACGACGGTCTCCACTTCTGGCAGTTCATGATTGCCGGATCTATTGCCGGCTGTGTCGAGCACATGGCGATGTTTCCCGTTGACACCGTTAAGACCCGCATGCAGGCCTTGGGCTCTTGCCCGGTCAAAACCGGCACTGTCCGTCAAGCCCTGAAGTCCATTCTCCAATCTGAGGGCCCATCCGCCCTTTACCGTGGAATAGGCGCAATGGGCCTTGGCGCTGGCCCGGCCCATGCCGTCTATTTCTCTGTCTACGAGACCTGCAAGAAGCGTTTATCAGAGGGGAACCCTAACAACGCTGCCGCACACGCGGCCTCTGGTGTCTGCGCCACCGTGGCCAGCGATGCCGTGTTTACGCCGATGGACATGGTGAAGCAGAGGCTGCAGCTGGGGAATAGTGGGTACAAGGGGGTTTGGGATTGTGTGAGAAGGGTTATGAGCGAGGAAGGGTTTCGGGCGTTCTACGCCTCTTATAGGACTACTGTGTTGATGAACGCCCCTTTCACAGCTGTGCATTTCACGACCTATGAGGCCGCAAAACGTGGTCTCATGGAGGTCTCGCCCGAGAGTGTTGATGATGAACGGTTAATTGTGCATGCCACTGCCGGTGCTGTGGCCGGAGCCTTGGCTGCCGCTGTTACGACGCCTCTGGATGTTGTGAAGACTCAATTGCAGTGTCAGGGCTGCAGAGAGTTTGGGAAGCCTTGCTGCATTCTTAGTTCGCCAAGGCCCTACCCTAATAAGGGTAGGGGCTTGGTGAGTAATGGGACCCTGTGCTCAAAATGCTGGCATCAGGTGTTCCACAGTGAGTTGTGTTGTGCTCGTGGGTCTATTGGCTTAGGACTGCAGAGAGGTGTCTGTGGTTGCGATAGGTTCAAAAGTGGATCAATTAAGGATGTTATTACAACAATAGTGAAAAAAGATGGGTATAGAGGGCTGATGCGAGGATGGATTCCAAGGATGCTCTTTCATGCTCCTGCAGCTGCTATTTGCTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAAAGACGTTGGCACTGTTACCTAA 1146 0.5358 MATDARAKFQNADFRPDFHADLKVSTHDGLHFWQFMIAGSIAGCVEHMAMFPVDTVKTRMQALGSCPVKTGTVRQALKSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKRLSEGNPNNAAAHAASGVCATVASDAVFTPMDMVKQRLQLGNSGYKGVWDCVRRVMSEEGFRAFYASYRTTVLMNAPFTAVHFTTYEAAKRGLMEVSPESVDDERLIVHATAGAVAGALAAAVTTPLDVVKTQLQCQGCREFGKPCCILSSPRPYPNKGRGLVSNGTLCSKCWHQVFHSELCCARGSIGLGLQRGVCGCDRFKSGSIKDVITTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDVGTVT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01411 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Vimu1g01411 381 Gene3D Mitochondrial carrier domain 159 380 IPR023395 -
Vimu1g01411 381 FunFam Mitochondrial RNA-splicing protein MRS3 11 158 - -
Vimu1g01411 381 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vimu1g01411 381 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Vimu1g01411 381 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Vimu1g01411 381 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Vimu1g01411 381 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Vimu1g01411 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 367 IPR018108 -
Vimu1g01411 381 Gene3D Mitochondrial carrier domain 12 158 IPR023395 -
Vimu1g01411 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
Vimu1g01411 381 PANTHER MITOFERRIN-1-RELATED 26 371 - -
Vimu1g01411 381 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Vimu1g01411 381 Pfam Mitochondrial carrier protein 221 370 IPR018108 -
Vimu1g01411 381 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Vimu1g01411 381 SUPERFAMILY Mitochondrial carrier 28 362 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01411 Vimu-Chr1 11848022 11851083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01411 1 376 Chloroplast and Mitochondria Gene Families AT2G30160 61.140 6.25e-152 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01411 K15113 - gmx:100802640 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01411 1 11848022 11851083 Vimu1g01411 1 11848022 11851083 ECH