LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01411	ATGGCGACGGATGCTAGGGCGAAGTTCCAGAACGCAGATTTCCGCCCCGATTTTCACGCGGACCTAAAGGTGTCAACTCACGACGGTCTCCACTTCTGGCAGTTCATGATTGCCGGATCTATTGCCGGCTGTGTCGAGCACATGGCGATGTTTCCCGTTGACACCGTTAAGACCCGCATGCAGGCCTTGGGCTCTTGCCCGGTCAAAACCGGCACTGTCCGTCAAGCCCTGAAGTCCATTCTCCAATCTGAGGGCCCATCCGCCCTTTACCGTGGAATAGGCGCAATGGGCCTTGGCGCTGGCCCGGCCCATGCCGTCTATTTCTCTGTCTACGAGACCTGCAAGAAGCGTTTATCAGAGGGGAACCCTAACAACGCTGCCGCACACGCGGCCTCTGGTGTCTGCGCCACCGTGGCCAGCGATGCCGTGTTTACGCCGATGGACATGGTGAAGCAGAGGCTGCAGCTGGGGAATAGTGGGTACAAGGGGGTTTGGGATTGTGTGAGAAGGGTTATGAGCGAGGAAGGGTTTCGGGCGTTCTACGCCTCTTATAGGACTACTGTGTTGATGAACGCCCCTTTCACAGCTGTGCATTTCACGACCTATGAGGCCGCAAAACGTGGTCTCATGGAGGTCTCGCCCGAGAGTGTTGATGATGAACGGTTAATTGTGCATGCCACTGCCGGTGCTGTGGCCGGAGCCTTGGCTGCCGCTGTTACGACGCCTCTGGATGTTGTGAAGACTCAATTGCAGTGTCAGGGCTGCAGAGAGTTTGGGAAGCCTTGCTGCATTCTTAGTTCGCCAAGGCCCTACCCTAATAAGGGTAGGGGCTTGGTGAGTAATGGGACCCTGTGCTCAAAATGCTGGCATCAGGTGTTCCACAGTGAGTTGTGTTGTGCTCGTGGGTCTATTGGCTTAGGACTGCAGAGAGGTGTCTGTGGTTGCGATAGGTTCAAAAGTGGATCAATTAAGGATGTTATTACAACAATAGTGAAAAAAGATGGGTATAGAGGGCTGATGCGAGGATGGATTCCAAGGATGCTCTTTCATGCTCCTGCAGCTGCTATTTGCTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAAAGACGTTGGCACTGTTACCTAA	1146	0.5358	MATDARAKFQNADFRPDFHADLKVSTHDGLHFWQFMIAGSIAGCVEHMAMFPVDTVKTRMQALGSCPVKTGTVRQALKSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKRLSEGNPNNAAAHAASGVCATVASDAVFTPMDMVKQRLQLGNSGYKGVWDCVRRVMSEEGFRAFYASYRTTVLMNAPFTAVHFTTYEAAKRGLMEVSPESVDDERLIVHATAGAVAGALAAAVTTPLDVVKTQLQCQGCREFGKPCCILSSPRPYPNKGRGLVSNGTLCSKCWHQVFHSELCCARGSIGLGLQRGVCGCDRFKSGSIKDVITTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDVGTVT	381

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu1g01411	381	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	30	117	IPR018108	-
Vimu1g01411	381	Gene3D	Mitochondrial carrier domain	159	380	IPR023395	-
Vimu1g01411	381	FunFam	Mitochondrial RNA-splicing protein MRS3	11	158	-	-
Vimu1g01411	381	PRINTS	Mitochondrial carrier protein signature	229	251	IPR002067	GO:0055085
Vimu1g01411	381	PRINTS	Mitochondrial carrier protein signature	48	62	IPR002067	GO:0055085
Vimu1g01411	381	PRINTS	Mitochondrial carrier protein signature	139	157	IPR002067	GO:0055085
Vimu1g01411	381	PRINTS	Mitochondrial carrier protein signature	181	199	IPR002067	GO:0055085
Vimu1g01411	381	PRINTS	Mitochondrial carrier protein signature	35	48	IPR002067	GO:0055085
Vimu1g01411	381	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	220	367	IPR018108	-
Vimu1g01411	381	Gene3D	Mitochondrial carrier domain	12	158	IPR023395	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01411	Vimu-Chr1	11848022	11851083	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01411	1	376	Chloroplast and Mitochondria Gene Families	AT2G30160	61.140	6.25e-152	430

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01411	K15113		-	gmx:100802640	561.222

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu1g01411	1	11848022	11851083	Vimu1g01411	1	11848022	11851083	ECH

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