Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01397 ATGACCATGAACGGCCACGGCCACCATACCGTAAACATCGGTAACAGCAACAACAACCCTAACGACGACGACGACCAGACCAACGTCTTCCATCCTTCCTCCTCTTCCGCTGACGGCGACAACAACAGCAACCACCGTGAAGATGACGACGAAGAACTCGTCGATCCCGACGATCCTTTCGACATTACTCATACGAAGAACGCCTCGCACGACACGCTTCGCCGTTGGAGACAAGCAGCGCTCGTGCTCAATGCGTCCAGGCGTTTTAGATATACTTTGGACTTGAAAAAGGAAGAAGAGAAAGAGCAAAAGAAACACTTGATTAGAGCCCATGCACAAGTCATAAGAGCAGCTCTGCTTTTCAGATTGGCCGGTGAACGTGAACTAGTGATAAGTACAGCAGTGTCACCCCCAACTCCAGCTGGTGATTATGATATCGGGCTCGAACAACTTGTTTCCATGTCTAAGGATCAGAATACTTCTGCTTTTCAGCAATATGGAGGGGCAAGTCAAAAACATTTCATTAGAGGCTTATCAAATTTAATAAAATCTAATCCGGATAAAGGTATTAGTGGAGATGATGCTGATCTGTTAAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGAAAAAAAGGAAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTGATAATAGCTGCTGTGGTGTCATTGGTACTCGGAATAAAAACAGAGGGTTTGGCTGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTTTGCTTGTCATTGTAGTTACAGCTGTCAGCGATTATAGGCAATCTCTGCAGTTTCAGAATTTGAATTCAGAAAAACAAAACATACAATTGGAGGTTATTAGAGGTGGGAGAACAATTAAAATGTCGATATTTGATATTGTTGTTGGTGATGTCGTACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACGGGCCATTCACTTTCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCACAAATCACCATTTTTGATGTCTGGTTGCAAAGTAGCGGATGGAGTTGGTGTTATGCTGGTAACTGGCGTTGGTATTAATACCGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGACAATGGAGAAGAAACTCCGTTACAGGTACGCTTGAATGGAGTGGCAACTTTTATTGGTGTAGTTGGGCTTAGTGTAGCTGTTTTAGTGCTTGCTGTCCTCTTGGGCAGATACTTTTCCGGCCATACCAAAGATGTAGATGGAAAAGTTGAATTTGTCGCTGGAAAGACTAGTGCCAGCAATGTAGTAGATGCGGTCATCAAAATCTTTACCATTGCAGTCACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTCTGGCTGTTACCTTAACCTTGGCATACTCAATGCGGAAAATGATGGCTGACAAGGCCTTGGTTAGGCGGCTATCCGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGGAGCACAAAAGTAAATCCACCAGATGACTCATCAAAGTTGAATCCAAAAGCTTTGTCTCTGATAAATGAGGGCATTGCACAGAATACAACCGGAAATGTTTTTGTTCCCAAGGACGGTGGAGAGACAGAGGTGTCTGGATCTCCTACAGAAAAGGCAATTCTTTCATGGGCATTAAAGCTGGGAATGAATTTTGATGTTACCAGATCAAATTCAAAAGTTCTCCATGTGTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTTTGAAGCTGGGGGGTTCTGAAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAGCATGCACTCAATATCTTGATTCAGATGGTCAGTTGCAATCCATTGAAGAGAAGAAGGCTTTTTTCAGACAATCTATTGATGACATGGCTGCTCGCAGCTTGCGTTGTGTAGCCATTGCATACAGGTCATATGAACTAGACAGAGTTCCATCTAGTGAGCAGGACTTAGACCAATGGTCCTTACCGGAACATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTAAAACTGTGCTCTGATGCCGGTGTTAAGGTACGCATGGTTACTGGAGATAACCTCCAAACAGCTAAGGCAATAGCTTTGGAGTGTGGAATACTGGCTTCAAGTGAAGAAGCCGTTGAGCCAACTATAATTGAAGGAAAGAAATTCCGTGAACTATCTGAAAAGGAAAGAGAAGATTGTGCCAAGAAAATAACTGTCATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCCCTACGTAAAGGAGGGGAAGTTGTTGCTGTCACAGGAGACGGCACCAATGATGCTCCTGCACTTCATGAGGGAGTTGTTCTAATGTATTCACGTAGGATTGTAGTTGCAGTTGAATGCAAAAAGCCTGGTGAATGTCAAAAGTTTACTGCGATCAACACCATTCCGGATGCAGACATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGTTCAGATATTATAATCCTAGATGATAACTTTGCATCAGTAGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCAAATATTCAAAAATTTATTCAGTTCCAGCTTACAGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCCATAACTTCTGGTGATGTTCCTCTAAATGCAGTACAACTTTTGTGGGTCAACCTTATCATGGATACACTTGGGGCGCTTGCACTGGCTACTGAACCGCCAACAGACAGCCTAATGCGCAGATCACCAGTTGGCCGAAGAGAACCTCTTATAACAAATATCATGTGGAGAAACCTGATTGTACAGGCTGTCTATCAAATCACAGTTCTTCTCGTTCTCAACTTCCATGGTGAAAGTATTCTACCCAAACAAGATACTAGAGCTGATTCCTTTCAAGTAAAGAATACTTTAATTTTCAACGCGTTCGTCCTGTGCCAATTATTCAATGAATTCAATGCTCGGAAACCCGAGGAAATGAATGTTTTCCGTGGGGTGACAAAGAACAAACTTTTCATGGGAATTGTTGGAGCAACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCAACAGTGAGGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTGTTATTGGCTTTGTCAGGTTAATTAACTCCTCTGAATTGTCATTTGATAACAACGGTTCTTGGAGTGCCAATGAATCATGCATTCTCTCTCTTTGGTCATTTTTCGCATCTCAAGACCTCTGTATGCTTCATTTTACAACACTACCACTATCATTGAATTCCTTCTGTAAACATATTTTAGCTTCGCTCTGGCCCCTTGCTATAGTTGGAAAATTCATTCCAGTTCCAAAAACACCATTGGCTCGTTACTTCAAGAAGCCACTAAGGAGATTAAGAAGGTCTAGATCTCGTGCTGCATAA 3600 0.4256 MTMNGHGHHTVNIGNSNNNPNDDDDQTNVFHPSSSSADGDNNSNHREDDDEELVDPDDPFDITHTKNASHDTLRRWRQAALVLNASRRFRYTLDLKKEEEKEQKKHLIRAHAQVIRAALLFRLAGERELVISTAVSPPTPAGDYDIGLEQLVSMSKDQNTSAFQQYGGASQKHFIRGLSNLIKSNPDKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAVVSLVLGIKTEGLAEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNSEKQNIQLEVIRGGRTIKMSIFDIVVGDVVPLKIGDQVPADGVLITGHSLSIDESSMTGESKIVHKDHKSPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDNGEETPLQVRLNGVATFIGVVGLSVAVLVLAVLLGRYFSGHTKDVDGKVEFVAGKTSASNVVDAVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGSTKVNPPDDSSKLNPKALSLINEGIAQNTTGNVFVPKDGGETEVSGSPTEKAILSWALKLGMNFDVTRSNSKVLHVFPFNSEKKRGGVALKLGGSEVHIHWKGAAEIVLGACTQYLDSDGQLQSIEEKKAFFRQSIDDMAARSLRCVAIAYRSYELDRVPSSEQDLDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKLCSDAGVKVRMVTGDNLQTAKAIALECGILASSEEAVEPTIIEGKKFRELSEKEREDCAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEGVVLMYSRRIVVAVECKKPGECQKFTAINTIPDADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMRRSPVGRREPLITNIMWRNLIVQAVYQITVLLVLNFHGESILPKQDTRADSFQVKNTLIFNAFVLCQLFNEFNARKPEEMNVFRGVTKNKLFMGIVGATFILQIIIIEFLGKFTSTVRLDWKLWLASLVIGFVRLINSSELSFDNNGSWSANESCILSLWSFFASQDLCMLHFTTLPLSLNSFCKHILASLWPLAIVGKFIPVPKTPLARYFKKPLRRLRRSRSRAA 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01397 1199 MobiDBLite consensus disorder prediction 1 69 - -
Vimu1g01397 1199 Gene3D - 512 834 IPR023214 -
Vimu1g01397 1199 FunFam Calcium-transporting ATPase 9 plasma membrane-type 369 539 - -
Vimu1g01397 1199 FunFam Calcium-transporting ATPase 525 722 - -
Vimu1g01397 1199 Gene3D - 196 391 - -
Vimu1g01397 1199 Pfam Cation transporting ATPase, C-terminus 940 1107 IPR006068 -
Vimu1g01397 1199 Gene3D - 525 722 IPR023299 GO:0000166
Vimu1g01397 1199 ProSitePatterns E1-E2 ATPases phosphorylation site. 517 523 IPR018303 -
Vimu1g01397 1199 SFLD Haloacid Dehalogenase 497 834 - -
Vimu1g01397 1199 Pfam Ca2+-ATPase N terminal autoinhibitory domain 57 100 IPR024750 GO:0005516
Vimu1g01397 1199 Gene3D - 223 511 - -
Vimu1g01397 1199 FunFam Calcium-transporting ATPase 68 124 - -
Vimu1g01397 1199 SUPERFAMILY Calcium ATPase, transduction domain A 293 388 IPR008250 -
Vimu1g01397 1199 FunFam Calcium-transporting ATPase 872 1112 - -
Vimu1g01397 1199 FunFam Calcium-transporting ATPase 271 391 - -
Vimu1g01397 1199 Gene3D - 68 122 - -
Vimu1g01397 1199 SUPERFAMILY Calcium ATPase, transmembrane domain M 177 1108 IPR023298 -
Vimu1g01397 1199 SFLD p-type atpase 497 834 IPR044492 -
Vimu1g01397 1199 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 521 727 IPR023299 GO:0000166
Vimu1g01397 1199 PANTHER CATION TRANSPORTING ATPASE 113 1174 - -
Vimu1g01397 1199 PRINTS P-type cation-transporting ATPase superfamily signature 515 529 - -
Vimu1g01397 1199 PRINTS P-type cation-transporting ATPase superfamily signature 715 726 - -
Vimu1g01397 1199 PRINTS P-type cation-transporting ATPase superfamily signature 339 353 - -
Vimu1g01397 1199 PRINTS P-type cation-transporting ATPase superfamily signature 822 841 - -
Vimu1g01397 1199 PRINTS P-type cation-transporting ATPase superfamily signature 737 747 - -
Vimu1g01397 1199 Pfam Cation transporter/ATPase, N-terminus 178 240 IPR004014 -
Vimu1g01397 1199 Gene3D - 867 1113 - -
Vimu1g01397 1199 FunFam Calcium-transporting ATPase 223 280 - -
Vimu1g01397 1199 NCBIfam calcium-translocating P-type ATPase, PMCA-type 171 837 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu1g01397 1199 CDD P-type_ATPase_Ca_PMCA-like 197 988 - -
Vimu1g01397 1199 SUPERFAMILY HAD-like 868 912 IPR036412 -
Vimu1g01397 1199 Pfam haloacid dehalogenase-like hydrolase 512 833 - -
Vimu1g01397 1199 SMART Cation_ATPase_N_a_2 174 245 IPR004014 -
Vimu1g01397 1199 Pfam E1-E2 ATPase 292 493 - -
Vimu1g01397 1199 SUPERFAMILY HAD-like 503 833 IPR036412 -
Vimu1g01397 1199 PRINTS Sodium/potassium-transporting ATPase signature 258 278 - -
Vimu1g01397 1199 PRINTS Sodium/potassium-transporting ATPase signature 634 652 - -
Vimu1g01397 1199 PRINTS Sodium/potassium-transporting ATPase signature 508 529 - -
Vimu1g01397 1199 NCBIfam HAD-IC family P-type ATPase 455 545 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu1g01397 1199 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01397 Vimu-Chr1 11688153 11702923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01397 39 1196 Primary Pumps ATPases AT3G21180 70.406 0.0 1608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01397 K01537 - gmx:100777143 1842.4