Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01395 ATGACAGAGATGGGTGAAGAAGCCAAGACAATTGTTCCAGAGTCCGTTCTGAAGAAGCGTAAGAGGGAGGAGGAATGGGCTTTGGCAAAGAAGCAAGCGCTCGAAGCTGAGAAAAAAAAGAGAGCCGAGAGCCGCAAACTCATCTATAACAGAGCCCAACAGTACGCAAAGGAGTACGATCAGCAGGAGAAGGATTTGATTCGGTTGAAACGTGAGGCAAAACTGAAAGGTGGATTTTATGTGGATCCAGAGGCTAAGCTCTTGTTTATCATTCGCATTCGTGGTATCAATGCGATGGACCCCAAGTCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGATCTTCAATGGTGTATTTCTCAAGGTTAACAAGGCCACCATGAACATGCTGCACAGAGTTGAACCATATGTGACTTATGGATACCCAAATCTTAAGAGTGTGAAGGAACTTGTTTACAAGAGAGGGTATGGAAAGCTCAACAAGCGGAGGACTGCTCTAACTGACAACGCCATCATTGAGCAGGCACTGGGCAAATATGGAATCATTTCAACTGAGGATCTAATCCACGAGATCATAACAGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTGTGGCCATTTAAACTGAAGGCTCCTTTGGGTGGTTTGAAGAAGAAGAGAAACCACTATGTTGAGGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA 741 0.4507 MTEMGEEAKTIVPESVLKKRKREEEWALAKKQALEAEKKKRAESRKLIYNRAQQYAKEYDQQEKDLIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVKELVYKRGYGKLNKRRTALTDNAIIEQALGKYGIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01395 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Vimu1g01395 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Vimu1g01395 246 Coils Coil 238 246 - -
Vimu1g01395 246 PANTHER 60S RIBOSOMAL PROTEIN L7 10 246 IPR039699 -
Vimu1g01395 246 Gene3D - 188 246 IPR036919 -
Vimu1g01395 246 Gene3D - 87 187 IPR036919 -
Vimu1g01395 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Vimu1g01395 246 FunFam 60S ribosomal protein L7 192 246 - -
Vimu1g01395 246 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Vimu1g01395 246 FunFam 60S ribosomal protein L7 87 191 - -
Vimu1g01395 246 NCBIfam 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vimu1g01395 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Vimu1g01395 246 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01395 Vimu-Chr1 11677039 11678646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01395 1 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.740 1.55e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01395 K02937 - gmx:100813342 415.231