Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01391 TTGCCTTTAACAATCTTTCTGGTATTTCCTAGGTGTTTTACCATGGATGGTATTCACGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGATTGCACCATATGAGCAATGGAAATGGGATTGATGAGGATCAGAATGATGGTGGTGATACTAATTGTGGTGGAAGTGAGAGTGTGGAAGGTGATATCCCCTCCAGCCATGGAAATCTCCCTGACAATCACGCTGTAATAATGGATCAAGGGGGTGATGCTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAAGTTTATGTCTTTGACTCCGTGTCACCAGAAAAGGTTCAAGCTGTACTACTGTTATTGGGAGGCCGTGAAATACCTCCAACCATGCCTACCATGCCAGTGTCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCGTTGATTAGGTTTCGTGAAAAGCGAAAGGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGGATGCAAAGGAATAAAGGTCAGTTTACATCTTCAAAGTCCAATCACGATGAATCTGCATCAGCTGCAACAAATTGGGGGCCAAATGAAAACTGGTCTGCAGAGAATAACGGATCCCAGCTGCAAGATATTGTGTAA 720 0.4361 MPLTIFLVFPRCFTMDGIHGGDSRIHISDGQHPIHVPYVQEHEHHGLHHMSNGNGIDEDQNDGGDTNCGGSESVEGDIPSSHGNLPDNHAVIMDQGGDAGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPTMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESASAATNWGPNENWSAENNGSQLQDIV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01391 239 MobiDBLite consensus disorder prediction 46 96 - -
Vimu1g01391 239 PANTHER GATA TRANSCRIPTION FACTOR 28 40 231 IPR045280 GO:0006355
Vimu1g01391 239 MobiDBLite consensus disorder prediction 198 239 - -
Vimu1g01391 239 MobiDBLite consensus disorder prediction 54 78 - -
Vimu1g01391 239 Pfam CCT motif 164 206 IPR010402 GO:0005515
Vimu1g01391 239 ProSiteProfiles Tify domain profile. 96 131 IPR010399 -
Vimu1g01391 239 ProSiteProfiles CCT domain profile. 164 206 IPR010402 GO:0005515
Vimu1g01391 239 SMART tify_2 96 131 IPR010399 -
Vimu1g01391 239 MobiDBLite consensus disorder prediction 197 239 - -
Vimu1g01391 239 Pfam tify domain 101 130 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01391 Vimu-Chr1 11639140 11642786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01391 15 238 Tify Gene Family AT1G51600 64.317 2.07e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu1g01391 CCT 6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01391 - - pvu:PHAVU_008G254600g 460.685