Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01389 ATGGGCAAGGCTTGCGAGCTTTGTAATAACCAAGCTTCTCTCTATTGTCCCTCCGATTCCGCATTTCTCTGCGGCGACTGCGACGCCGCCGTGCACGCCGCGAACTTCCTCGTCGCTCGCCACTTCCGTCGCCGCATCTGTGCCAAATGCAATCGTTCCACCGGAATCTACACCGCCGGCGCCACCTTTCCATCCACCTGCACCTCTTGCTCGCCGGAGAAGGCTCTCTCCGACGACGGCAATTCTCTCCCTTCGTCCTCCACCTGCGTCTCGAGTTCCGAGTCCTGCGCCACGAAGAAGATTAAGGCGACACTCGGCGCGGCGGGGAAGAAAAGGAGGAGGAGTTTTTCGAGTTCGGTGACCGACGACGCGTCTCGGGAAGCGAAGAAGCGACGGGAGAAGGTCGGATCGGTGGAGCAGGAGGAGGTGTTCGCAAAATGGAGCAGAGAGTTAGGTTTAGGGTTAGGGATAGGAGAGAACGGTAACCGCGTGGCGTCGCACGCTCTGAGCGTGTGCCTGGGAAAGTGGAATTTGCTTCCGTTCAGGGTGGCCGCGGCGACGTCGTTTTGGCTGGGCCTGAGATTTTGTGGGGACAGAAGTGTGGCCACGTGGCAGAATCTGGCGAGGTTGGAGAAAATCTCCGGAGTGCCAGCTAAGCTGATTCTGGCCGCACATGCGAACCTCGCACGTGTCTTCACGCTACCCCGCGAACTGCACGAGGGATGGGGCGAGTCATAG 738 0.5949 MGKACELCNNQASLYCPSDSAFLCGDCDAAVHAANFLVARHFRRRICAKCNRSTGIYTAGATFPSTCTSCSPEKALSDDGNSLPSSSTCVSSSESCATKKIKATLGAAGKKRRRSFSSSVTDDASREAKKRREKVGSVEQEEVFAKWSRELGLGLGIGENGNRVASHALSVCLGKWNLLPFRVAAATSFWLGLRFCGDRSVATWQNLARLEKISGVPAKLILAAHANLARVFTLPRELHEGWGES 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01389 245 SMART bboxneu5 1 46 IPR000315 GO:0008270
Vimu1g01389 245 MobiDBLite consensus disorder prediction 109 134 - -
Vimu1g01389 245 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Vimu1g01389 245 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 95 - -
Vimu1g01389 245 MobiDBLite consensus disorder prediction 115 134 - -
Vimu1g01389 245 Pfam B-box zinc finger 4 33 IPR000315 GO:0008270
Vimu1g01389 245 CDD Bbox1_BBX-like 4 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01389 Vimu-Chr1 11602229 11602966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01389 1 245 C2C2-CO-like Transcription Factor Family AT3G21150 31.474 3.61e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu1g01389 zf-B_box 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01389 - - pvu:PHAVU_008G254400g 401.364