Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01378 ATGGCCAGAAAATCGCAGAAAACCCTCAAGAACACTGACACCAACAACACCAACACTGCAAAACGCACACGCAAAACCGTTCCAAGAGACTCACCACCACAACGAAGTTCAATCTATAGGGGTGTCACAAGACATCGTTGGACTGGTCGGTATGAGGCTCATCTCTGGGACAAAAACTGTTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGGGGCGTATGATGATGAAGAAGCCGCAGCCCGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTCCCATTAACAAATTATGAGGAGAAGCTCAAGGAAATGGAGGGTCAATCAAAAGAAGAATACATTGGATCCTTGAGAAGAAAAAGCAGTGGATTTTCTCGAGGAGTTTCAAAATACCGAGGTGTAGCAAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTCGGCAACAAATACCTATATCTTGGAACTTATGCAGCAGCATATGACATGGCAGCCATAGAATACAGAGGAGCTAATGCTGTTACAAACTTTGACGTGAGCCGTTATATCAATTGGCCAGGTCCTAAAAGCGAAGAAGAACATAAAAATGTTGCTATAAACGAAAATGTAAACTCTAATGGTGATAATGAACTAGGGTTTGTTTCACATGAAAATGGTTCAATAACTGATGTGAACACAACAGAGCATGTAGCACAATCTACAGAGTCAAATCCTTCTCGTCGCACATTCCCAGAAGACATTCAAACAATTTTTGAGAGTCAAGGACCAGACATCTACACTGAAAATGATGATATCATTTTTGGTGACTTGGGTTCGTTTGGGGCACCAATTTTTCATTTCGAACTTGATGTTTAG 888 0.42 MARKSQKTLKNTDTNNTNTAKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYAAAYDMAAIEYRGANAVTNFDVSRYINWPGPKSEEEHKNVAINENVNSNGDNELGFVSHENGSITDVNTTEHVAQSTESNPSRRTFPEDIQTIFESQGPDIYTENDDIIFGDLGSFGAPIFHFELDV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01378 295 ProSiteProfiles AP2/ERF domain profile. 137 189 IPR001471 GO:0003700|GO:0006355
Vimu1g01378 295 ProSiteProfiles AP2/ERF domain profile. 38 101 IPR001471 GO:0003700|GO:0006355
Vimu1g01378 295 MobiDBLite consensus disorder prediction 7 22 - -
Vimu1g01378 295 Pfam AP2 domain 38 93 IPR001471 GO:0003700|GO:0006355
Vimu1g01378 295 SMART rav1_2 137 195 IPR001471 GO:0003700|GO:0006355
Vimu1g01378 295 SMART rav1_2 38 107 IPR001471 GO:0003700|GO:0006355
Vimu1g01378 295 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Vimu1g01378 295 PRINTS Ethylene responsive element binding protein signature 171 191 IPR001471 GO:0003700|GO:0006355
Vimu1g01378 295 CDD AP2 136 191 IPR001471 GO:0003700|GO:0006355
Vimu1g01378 295 FunFam AP2-like ethylene-responsive transcription factor 37 103 - -
Vimu1g01378 295 SUPERFAMILY DNA-binding domain 37 102 IPR016177 GO:0003677
Vimu1g01378 295 MobiDBLite consensus disorder prediction 1 38 - -
Vimu1g01378 295 SUPERFAMILY DNA-binding domain 136 191 IPR016177 GO:0003677
Vimu1g01378 295 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 215 - -
Vimu1g01378 295 Gene3D AP2/ERF domain 136 191 IPR036955 GO:0003700|GO:0006355
Vimu1g01378 295 Gene3D AP2/ERF domain 38 103 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01378 Vimu-Chr1 11490650 11493799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01378 131 224 AP2-EREBP Transcription Factor Family AT5G57390 36.697 2.21e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vimu1g01378 AP2 1.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01378 K09285 - gmx:100807781 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01378 1 11490650 11493799 Vimu1g01378 1 11490650 11493799 ECH