Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01375 ATGGAGAAGTACGAGAAGCTGGAAAAGGTGGGGGAAGGAACATATGGGAAAGTGTACAAGGCACGAGAGAAAGCGAGTGGCAACGTGGTGGCGCTGAAGAAGACGCGTCTGGAGATGGACGAAGAAGGTGTGCCTCCTACGGCTCTCCGAGAGGTCTCGCTTCTGCAACTTCTCTCCCAATCCATCTACATCGTGCGCCTCTTATCCGTAGAACACGTGGATAAGGTCCCCAAAGCCCAGAAGGCCTCCGCCAACCCACTCACCAAGCCCATCCTATACCTCGTTTTCGAGTACCTTGACACTGACCTCAAGAAGTTCATCGATTCCCACCGTAAGGGCCCTAACCCTAGGCCGCTCCCTCCCCAACTTGTTCAGAGCTTTCTCTTCCAGCTATGCAAAGGCGTGGCGCACTGCCACAGCCACGGTGTCCTCCATCGCGATCTCAAGCCCCAGAACCTACTCCTCGATCAGCAGAAGGGTATTCTCAAGATCGCTGATCTGGGCCTCGGGCGTGCCTTCACGGTCCCTCTCAAGAGCTACACGCATGAGATTGTTACTCTGTGGTATCGAGCGCCTGAGGTTCTCCTTGGCTCAACGCATTACTCCACAGGGGTTGATATTTGGTCTGTTGGCTGCATCTTTGCTGAAATGGTGAAAAGGCAAGCGCTTTTTCCTGGGGATTCTGAGTTCCAGCAGCTAATTCACATATTCAAGATGTTGGGGACTCCAACGGAGGATCAATGGCCAGGAGTTACTTCTCTGCGCGATTGGCATGTGTACCCGCGGTGGGAACCTCAGAGTCTGGCAAGGAACGTACCTACCTTAGGACCCGATGGAGTGGACCTGTTATCGAAAATGCTCAAGTACAACCCTTCCGAGAGAATATCTGCCAAGGCAGCACTTGATCATCCCTACTTTGACAGTCTCGACAAGTCTCAATTTTAG 945 0.5291 MEKYEKLEKVGEGTYGKVYKAREKASGNVVALKKTRLEMDEEGVPPTALREVSLLQLLSQSIYIVRLLSVEHVDKVPKAQKASANPLTKPILYLVFEYLDTDLKKFIDSHRKGPNPRPLPPQLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVKRQALFPGDSEFQQLIHIFKMLGTPTEDQWPGVTSLRDWHVYPRWEPQSLARNVPTLGPDGVDLLSKMLKYNPSERISAKAALDHPYFDSLDKSQF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01375 314 Gene3D Transferase(Phosphotransferase) domain 1 102 313 - -
Vimu1g01375 314 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vimu1g01375 314 ProSiteProfiles Protein kinase domain profile. 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01375 314 SMART serkin_6 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01375 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Vimu1g01375 314 Pfam Protein kinase domain 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01375 314 FunFam Cyclin-dependent kinase B2,2 1 100 - -
Vimu1g01375 314 Gene3D Phosphorylase Kinase; domain 1 1 100 - -
Vimu1g01375 314 SUPERFAMILY Protein kinase-like (PK-like) 1 309 IPR011009 -
Vimu1g01375 314 FunFam Cyclin-dependent kinase 2 102 313 - -
Vimu1g01375 314 PANTHER CELL DIVISION PROTEIN KINASE 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01375 Vimu-Chr1 11474656 11478351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01375 1 314 Core Cell Cycle Gene Families AT3G54180 81.529 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vimu1g01375 Pkinase 2.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01375 K07760 - gmx:100805119 609.757