Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01370 ATGTGCCTTTCTTTTGAGATGGGGATATATCTCAGCGCTCCGAAAACAGAGAAAGCCTCTGAAGATGGCGAGAACGACAAGCTGCGGTTTGGTTTGTCTTCCATGCAGGGTTGGCGGGCTTCCATGGAAGATGCTGTAAGTAATCACCTCCTTCTTTTTCTGCGTTTTGTGTCATTTGCTTCCGCTTGGTTTTTATGTTGTCATCGACAGCATGCAGCTATCCCATATTTGGACGAGTCTACATCTTACTTTGGCGTTTATGATGGCCATGGAGGCAAAGCAGTTTCTAAATTCTGTGCCAAGTATCTACACCAGCAGGTGCTGAAGAGTGAATCTTACCGAGCTGGAGATATAAGCACATCATTACAAAAATCTTTTCTTAGAATGGATGATATGATGCGTGGGCAAAGAGGGTGGAGGGAATTAGCTGTCTTGGGAGATAAAATAGAAAAGTTATCTGGTATGTTAGAAGGCTTTATTTGGTCTCCCAGGGGCAGTGAAGCAAATGAGAATGTCGATGATTGGGCATTTGAGGAGAGGGTCCTTTCTGATTTGGTGATTACAGCTGCACATTATAAGGCACACAATTTATCTAAGGATCACAAGCCTGATCTTGAGGCTGAGAAAGACAGGATTCTAAAAGCTGGTGGTTTCATCCAAGTTGGACGGGTCAATGGAAGTTTAAACTTGGCTAGAGCAATTGGAGATATGGAGTTCAAGCAGAATAAGTATTTGCCTGCCGAAAAGCAGATCGTGACTGCTGATCCGGACGTAACTTCAGTTGAACTTTGTGATGATGATGAATTCCTTGTGATAGCCTGTGATGGAATATGGGATTGCATGTCTAGCCAACAGCTTGTGGACTTTATACATCAACAGTTAAAGACAGAGAATAAACTTTCTGCGGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACCGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAAACCTTCCAGCCCTGATGTTTCTGTCACCAACCAGCCCCAATCGTCTGCTCAACCTCAACCACCTGAAACCGATAAAAGTTCAGAGAAAAAAGTAGAATCGAAGTGA 1104 0.4339 MCLSFEMGIYLSAPKTEKASEDGENDKLRFGLSSMQGWRASMEDAVSNHLLLFLRFVSFASAWFLCCHRQHAAIPYLDESTSYFGVYDGHGGKAVSKFCAKYLHQQVLKSESYRAGDISTSLQKSFLRMDDMMRGQRGWRELAVLGDKIEKLSGMLEGFIWSPRGSEANENVDDWAFEERVLSDLVITAAHYKAHNLSKDHKPDLEAEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQIVTADPDVTSVELCDDDEFLVIACDGIWDCMSSQQLVDFIHQQLKTENKLSAVCEKVFDRCLAPTAGGEGCDNMTMILIQFKKPSSPDVSVTNQPQSSAQPQPPETDKSSEKKVESK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01370 367 ProSiteProfiles PPM-type phosphatase domain profile. 29 331 IPR001932 -
Vimu1g01370 367 SUPERFAMILY PP2C-like 9 333 IPR036457 -
Vimu1g01370 367 MobiDBLite consensus disorder prediction 335 355 - -
Vimu1g01370 367 Gene3D - 6 167 IPR036457 -
Vimu1g01370 367 Gene3D - 181 363 IPR036457 -
Vimu1g01370 367 MobiDBLite consensus disorder prediction 335 367 - -
Vimu1g01370 367 SMART PP2C_4 19 329 IPR001932 -
Vimu1g01370 367 CDD PP2Cc 29 331 IPR001932 -
Vimu1g01370 367 PANTHER PROTEIN PHOSPHATASE 2C 22 330 IPR015655 GO:0004722|GO:0006470
Vimu1g01370 367 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Vimu1g01370 367 Pfam Protein phosphatase 2C 187 316 IPR001932 -
Vimu1g01370 367 Pfam Protein phosphatase 2C 30 134 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01370 Vimu-Chr1 11415638 11422971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01370 7 335 PP2C-type Phosphatase Gene Family AT2G25070 63.128 6.71e-167 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01370 K17499 - gmx:100776787 556.214