LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01363	ATGATAATGCTCATCGAAATACATAGTAGGCTGCTGCAGCCAAAGTGGTGGAAGATCTTTTTCTATATTGGTTTTACTTTCTTCATCTCCCTTTCCACCTTATTTGCAAAGGCATGGGAGTGCTCCAACTCTCGCTGTTTGGAGGCTCACACAGCCTTCTTGGTTTTGCTCATAACTTCTATGTACACCTTTTTCTATGATAAACAAGTCACAGAGAAGCCAGATGCATATAGTCTGGTTTCGTGTGCAGCATTCGCTATCATGTCACTAGGCTTGTCAAGACTCAGTCACTTTGGATTTAAGGTTGATCTTCTATATTTTTTCAGTGGATTTCTGACAGTACAACTCATGAAAATAAAATTATGGTTAGTAATTGTTGGAGGAGGTTTCAGTTATTCCCTCATCATTCTTCGTTCGGCCTTGGATGCTTCAGCCAGAACTGGGTATGTTGGACTCCATGTCAATGATCACGTAGTTATTGAAATTGGTTCACACTCACAAGGAACAAGCCGCAATTTTTCACAAGTTGGTTCACCTCAAACTATTACCACTGTTGTTAATTCCCTCGTCATGCCGCAAGACGTTGTTGTCTCTGAAGGAGATGAGGATTCAGGATTCATGGTCACTCAAAGCAAAATTGACAGTAACAAAAGTATCATGGCACGATTCATGGAATGTATAGAGGGGCTTAAGAAGGAGAATGAGACCCTTATCGACACAATTTCGAAGCATGTAGATGGATACCTTAAAGCTAATGTGGCCAACAAGATTCCAACGGTGGAACTCCATGCTGACAACAACTTGGTGGTTGATGCATTGTCTGCTAGAATCATCAACGACCTTCACGAAGCCGTATGGCTGATACTGGCTGAAGGTTTTGAGGAGGATTGTTGCAGAGCATACTATACTTGCCGAAGGGAGTTTCTGAAAAAGTGTTTATGGACTTTTTGGTTGCAAATGCAAGAGCTTTGCCTGGAGGACATTGATAAGATGGAGAAGATTCAGAGTTGGTTAACAAAGGTTTTGTACGTAGTTGATAGTGTACTTCTTCCCAATGAAAGGACACTCTGTGATCGCGTCTTTAAAGGGGTCTCTTCCCCTGGGGATTTTGCTTTCACTATGGTTTGTAGAGAACTGAATATTTGTTTGGTTCGCATTGCCAATCACTTGGCAACTATTCTGGTGTGTGAAAATTTTACATATTATGCGGGTGGTGAACTTCATCCTAATATCTGTGAATTGGTGCACAAATTTCGTTATGTTTGCACACAAAGGGATAATAGATCTAGGCAAGGATTAGAAGAATACACCATGTTTGATAAGGAGGGAAAGCTTTCACCGTCTGTGAAAGTGGCCAGGATAATAGCAACAGCACTGATAGAGAGGATTTTGGAAGTGGAGTCCAAAAATTACCATAACCCTTCTCTGGGATTTGTTTTCATCATGAACAACCTGAGTTTCATACAACTCGAAGCAAAGTTCTATGGATTGGTTCCTATTTTTAGTCAAGATTGGCTCCGGAAAATCACAACAAAATTTCAGCAAAACCTCGAACTCTATCTGAGAAGCTCGTGGAATAAGATTGTGGACTTTCTGAAGTTTGATATTTGTGAATCAGAGACTAGTGTTGTGGTTGGGTTTCTGAAAGACAGGATAAATTCGTTCAACGAACACTTTGATGAGATATGCAATGTTCAGTCTACTTGGTTTGTGTTTGATGAAGAGTTAAGAAAACATATTGTAAAATCCATAGAAAACATGTTGCCAGCATATGGAAACTTCATTGGAAGGTTGCAGAATGTTCTTGGCAAACACAGTTATTATTATATTAAGTATGGAATGTTTGACATCCAAGATCGAGTCGGCAATCTGTTTGTTGTGATGAAGAATAAGAATCTGTTTCTGAAACAGAAAAAGCAAACCTTGCTTAAGAACAACAGACTGCTCATGCTCATCAAAATTTGGAGTTGGCTACATCAGCCAAAGACATGGGAATACTCCAACTCTCGCTGTTTGGAAGCTCACACAGCATTTTCTATTTTGCTTATCACTTCTGTATACTCCTTTTTCCTTGATAAAGATCTGAAAAAGAAAGCAGATGCGTATAGTCTGCTTTCTTGTGTTGCTTTTGCTATCATGTCTCTAGGCTTGTCTAGGCTGAGTCAGTTAGGATTTGAGGTTGATCTCCTGTATTTCTTTTGTGGACTTCTGACCGTACAACTCATGAAAATAAAACCGTGGTTAGTCACTGTTGGAGGAGCTTTCAGTTATTCCCTCATCATTCTTCGTTCCAATTTGGATCTTCAACCAAGAAGTTGGTATCATGGACTTCAACACCAAGATCATGTAGTGCTTGAAATTGATTCTCATTCACAACCACAAGGAACCAGTAATAGTGTTACTCAAGTGGATTCAACCCAAACAATTATGGCTAGTTCACAACCACACCCTGCCATTGATATGGTCTGGCCTTCGAGAGGAACAAGGCACAGTGCTTCTCAAGTAGTTTCACCTCAGGAGGGTGGTGCCCCTCCAGAAAACATTTATGGTACCAAGGAATGCTTCATGGGTTGTATAGAGGCTCTTAAGAAGGAGAATGGGAGTGTTGTCAGAGCAATTTCCATGCATGTAGACAAATACCTTAAAGCTAGTGTTCTTAGTGAGGAGCAGATTTCAGTGCCAGAATATCATGGCGACGACAACATGGTGGTGGATTCATTGTCGTCAGGAATGATCAACAAGCTTCGTGAAAATGTACAGAAGATGGTGTCAGACGGATTTGTGAAGGAATGTTTGCACGTGTATAGTAATTGGCGGAGGGAGTTTCTGAAAGAGAGTCTCTGGGCATTAGGGTTGCAGGTTCAAGAGCTCAACGAGGAGGACATTAACAAGTCGGAGAAGATTGAGAGGTTGATAAAAGCTATGAACATAGCTGCGAGGATACTCTTTCCTAATGAAAAACGACTCTTCAATCGTGTCTTTAGCGGCTCCATTCGCAATGTGGAGTTTCATTTCAGGGAACTTTGCACGGAATTGGTTACCAGTCTGCTGAACTCTGCCCTTGCCTTGGCAACTTGGAGCCATTTCATGTGCAACACATTGGAGGAGTTGATACAAGACTTCGAATCATTTACATCAGGCAGAAATATTGTCGTGCCCCTAATAAGGCGGAGATTGTGCATTTGTGAGGCTTTGGAAGATGTATCACTCATTACCGGTGGCGGGATTCATCCTATTACCCATGCAGTGATGTATTATATTTATTCTATCAACAGAAATAGGGAAATTAGTAAACTTAGCCAAGATTTGAAAGAGGGAAAAATTCCATCATCTGTGCACAGGGCGAGAGTGAGAATTCTGTTAGAGAGTAAGTCCAAATATGGTAATAAGCTTACACTGATGTACTACATTAAATCTCTAAACCAAAGTAGGGAGAGTAAACTTAGACAAGGTTTAGAAGATGAAATGCTTTCACCTGTGTACCTGGACAGGATGACAGAGCTTTTAGAGAGCTGTTTGGTAGCAAACTCCAAAAATTGCAAAAACCCTTCTTTGGGTCATGTTTTCATCATGAATAATCGGAGATTCATAGAAGTAGAGACAAAACTAAATGGATTGGAACCTTTTTTTGGAGATGACTGGCTCCACAAAAACACAACAAAGATCCAAGAAAACCGTGAGCTCTATCTAAGAAGCTCATGGAATAAGATTGTGGACCTTTTGAAGGTAGACATCAATCAACTAGAGACTAGTGTTGTAGCCGAGTTCATTAAAGACAACCTTTATTGGTTCAACGAACTCTTTGATGAGGCATGCAACATTCAGTCTACATGGCCTGTCTGTGATGAGGAGCTAAGGGAACAAATAATAAAATCCATAGAAAACATGTTGCCAGCATACGGAAGTTTCCTTGGCACATTTGAGGAATTTTTTGGGAAATCGACTCAACAAATTGTTTCTTGTGAGGGAGTAGATGAATCTGTTGCTGGAAGAGAGGGAATGCGAACAATATCTTATCAGTGTGGAGACTTATGTGTATGTGTGAGTGTGGAACCCCTTCCTACAGTGGTATCAGAGCCGTTTGTCTTGGTGATGTTTCCGCTGGAGGGGGAGGAGATGCATGCCGCACGCGTAGAAGAGAGTGACGCACGCCGCAGCGTACAAGGGAGACGCATGCCGCACGCCGTACAAGGGAGACGCATGCCGCACGCGTACAAGAGAGTTACGCACGCGTACAAGGGACGCGTGGTAGTTGGAGACACAAAGGAGAATTGTCTTAAGCAAGATCGGCTTCAAACTCTGAGAAGCGGAGAAACAACCATGGGAGAAGAGGAAGAATTTAGGTATATGGGGGCATCTTCCGAAAAATGGTATCAGAGCTCATGGTTCGGGTCTGGTGACCGTGCTCAGTCGACTTTGGCCATAGCTAATAGCCTGGAAGTGAATCATGAGAGGTGGAGAGAGAGCAAAGAGATGCTCAGTAGAAGTGTTGACCATGGTGTACTCGAGGATAAGAAAGAAGACTTCCGCTGTAGGGGAGGTGGTCCTTTGTTTGAGGGGAGGATAGCATACTATACCTATCGAAGGGAGTTTTTGAAAAAGTTTTTATGGACTTCTGGGTTGCAAATGCAAGAGCTTTGCATTGATGACATTGATAAGATGGAGAAGATTCAGTGTTGGTTAACAAAGGTTTCGTATGTAGTTGATAGGGCCTCCTCCCCTGGGGATTTTGCTTTCACTGTGGTTTGTAGAGAATTGAATATTTGTTTGGTTCGCGTTGCCAATCACTTGGCAACTATTCTGGAGTGTCAAAATTTTACATATTATGAGGGTGGTGAGCTTCATCCTAATATGTGTGAATTAATGCACAAAATTCGTTATGTTTGTACACAAAGGGATAATAGATCTAAGCAAGGATTAGAAGAATACACCATGTTTGATAAGGAGGGAAGGCTTTCACCGTCTGTGAATGTGGCCAAGATAATTGCAACAGCCCTGGTTAGAGAGAATTTTGGAATTGCACCTCCAGTCTTTGATGGAGAAAGCTACGATCTTTGGGCTGTCAAACTGGAAACTTATCTGGAGGCTCTAGATCTTTGGGAAACTGTAGAAGCAGAGTATGAAGTTCTTCCGCTGCTGGAAAATCCTACCATGGCCCAGATCAAACTTCACAAGGAGAGAAAAACTAGAAAAGCAAAGGCAAAATAA	5208	0.4167	MIMLIEIHSRLLQPKWWKIFFYIGFTFFISLSTLFAKAWECSNSRCLEAHTAFLVLLITSMYTFFYDKQVTEKPDAYSLVSCAAFAIMSLGLSRLSHFGFKVDLLYFFSGFLTVQLMKIKLWLVIVGGGFSYSLIILRSALDASARTGYVGLHVNDHVVIEIGSHSQGTSRNFSQVGSPQTITTVVNSLVMPQDVVVSEGDEDSGFMVTQSKIDSNKSIMARFMECIEGLKKENETLIDTISKHVDGYLKANVANKIPTVELHADNNLVVDALSARIINDLHEAVWLILAEGFEEDCCRAYYTCRREFLKKCLWTFWLQMQELCLEDIDKMEKIQSWLTKVLYVVDSVLLPNERTLCDRVFKGVSSPGDFAFTMVCRELNICLVRIANHLATILVCENFTYYAGGELHPNICELVHKFRYVCTQRDNRSRQGLEEYTMFDKEGKLSPSVKVARIIATALIERILEVESKNYHNPSLGFVFIMNNLSFIQLEAKFYGLVPIFSQDWLRKITTKFQQNLELYLRSSWNKIVDFLKFDICESETSVVVGFLKDRINSFNEHFDEICNVQSTWFVFDEELRKHIVKSIENMLPAYGNFIGRLQNVLGKHSYYYIKYGMFDIQDRVGNLFVVMKNKNLFLKQKKQTLLKNNRLLMLIKIWSWLHQPKTWEYSNSRCLEAHTAFSILLITSVYSFFLDKDLKKKADAYSLLSCVAFAIMSLGLSRLSQLGFEVDLLYFFCGLLTVQLMKIKPWLVTVGGAFSYSLIILRSNLDLQPRSWYHGLQHQDHVVLEIDSHSQPQGTSNSVTQVDSTQTIMASSQPHPAIDMVWPSRGTRHSASQVVSPQEGGAPPENIYGTKECFMGCIEALKKENGSVVRAISMHVDKYLKASVLSEEQISVPEYHGDDNMVVDSLSSGMINKLRENVQKMVSDGFVKECLHVYSNWRREFLKESLWALGLQVQELNEEDINKSEKIERLIKAMNIAARILFPNEKRLFNRVFSGSIRNVEFHFRELCTELVTSLLNSALALATWSHFMCNTLEELIQDFESFTSGRNIVVPLIRRRLCICEALEDVSLITGGGIHPITHAVMYYIYSINRNREISKLSQDLKEGKIPSSVHRARVRILLESKSKYGNKLTLMYYIKSLNQSRESKLRQGLEDEMLSPVYLDRMTELLESCLVANSKNCKNPSLGHVFIMNNRRFIEVETKLNGLEPFFGDDWLHKNTTKIQENRELYLRSSWNKIVDLLKVDINQLETSVVAEFIKDNLYWFNELFDEACNIQSTWPVCDEELREQIIKSIENMLPAYGSFLGTFEEFFGKSTQQIVSCEGVDESVAGREGMRTISYQCGDLCVCVSVEPLPTVVSEPFVLVMFPLEGEEMHAARVEESDARRSVQGRRMPHAVQGRRMPHAYKRVTHAYKGRVVVGDTKENCLKQDRLQTLRSGETTMGEEEEFRYMGASSEKWYQSSWFGSGDRAQSTLAIANSLEVNHERWRESKEMLSRSVDHGVLEDKKEDFRCRGGGPLFEGRIAYYTYRREFLKKFLWTSGLQMQELCIDDIDKMEKIQCWLTKVSYVVDRASSPGDFAFTVVCRELNICLVRVANHLATILECQNFTYYEGGELHPNMCELMHKIRYVCTQRDNRSKQGLEEYTMFDKEGRLSPSVNVAKIIATALVRENFGIAPPVFDGESYDLWAVKLETYLEALDLWETVEAEYEVLPLLENPTMAQIKLHKERKTRKAKAK	1735

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g01363	1735	SUPERFAMILY	Cullin repeat-like	887	1313	IPR016159	-
	Vimu1g01363	1735	Pfam	Exo70 exocyst complex subunit	458	619	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vimu1g01363	1735	Pfam	Exo70 exocyst complex subunit	970	1311	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vimu1g01363	1735	Gene3D	Exocyst complex component Exo70	850	1324	-	-
	Vimu1g01363	1735	SUPERFAMILY	Cullin repeat-like	224	625	IPR016159	-
	Vimu1g01363	1735	Gene3D	Exocyst complex component Exo70	398	632	-	-
	Vimu1g01363	1735	Gene3D	Exocyst complex component Exo70	201	395	-	-
	Vimu1g01363	1735	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	266	391	IPR004140	GO:0000145\|GO:0006887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01363	Vimu-Chr1	11281746	11291424	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01363	404	625	EXO70 exocyst subunit family	AT5G58430	40.175	2.73e-36	145

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01363	-		-	var:108336660	1127.85