Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01361 ATGCCACAAGACACTAGTGTCACTAAAGGAGATGAGGATTCAGGATTCATGGTGCTTAAGAAGGAGAATGAGACCCTTATTGACACAATTTCGAGGCATGTAGATAGATACCTTAAATCTAATGTGGCCAACAAGATTCCAACGATGGAACTCCATGCTGACAACAACTTTGTGGTTGATGCATTGCTTATTGGACTCATCAACGACCTTTATGAAACTGACACTCTGATCGCGTCTTTAAAGGGGCGCGTCTTTAAAGGGGCCTCTTCCCCTGGAGATTTTGCTTTCACTATGGTTTGTAGAGAATTGAATATTTGTTTGGTTCACATTGCCAATCACTTGGCAACTATTTTGGAGTGTGAAAATTTTACATATTATGAGGATGGTGAGCTTCATCCTAATATATGTGAATTGATGCACAAAATTCGTTATGTTTGTACACAAAGGGATAATAGATCTAGGCAAGGATTAGAAGAATACACCATGTTTGATAAGGAGGGAAGGCTTTCACCGTCTTTGAATGTGGCCAGGATAATTGCAACAGCCCTGCAAACCTTGCTTAAGAAACAACAGAGTGCTCATGCTCATCAAAATTTGGACTTGGCTACATCAGCCAAAGGTATGGAGATTAGTGTGTTTTGCTTCATCTATCGTTGGCCTTATATTTTATGCTTTGAGCTCCTCTTTCAATCATTTACTTGGAAATTGGAGCTGGTGGAAACATGGGAACACTCCAACTCTCGCTGTTTGGAAGCTCACACTGCATTTTCTGCTTTGCTTATGACTTCTGTATACTCCTTTTTCCTTGATAAAGATCTGAAACAGAAAGCAGATGCCTATAGTCTGCTTTCTTGTGTTGCTTTTGCTATCATGTCTCTAGGCTTGTCTAGGCTGAGTCAGCTAGGATTTGAGGTTGATCTCCTCTATTTTTTCTGTGCACTTCTGACGGTACAACTCATGAAAATAAAACTGTGGCTAGTCACTGTTGGAGGAGTTTTCAGTTACTCCCTCATTGTTCTTCGTTCCAATTTGGATCCTCAACCAAGAAGTGGGTATCATGGACTTCAACAACAAGATCATGTAGTGCTTGAAATTGGTTCTCATTCACAACCACAGGGAACCAGTAATAGTGTTACTCAAGTGGATTCAACCCAAACAATTATGGCTAGTTCACAACCACATCCAGTCATTGATATGGTCTGGCCTTCAAGAGGAATAAGGCAAAGTGCATCTCAAGTAGTTTCACCTCAAGAGGGTGGTGCTGGTGGTGCCCCTCCAGAAAACATTTATGGTACCAAGGAATGCTTCATGGGTTGTATAGAGGCTCTTAAGAAAGAGAATGGGAGCGTTCTCAGAGCAATTTCCATGCATGTAGACAAATACCTTAAAGCTAGTGTTCTTAGTGGGGAGCAGATTTCAGTTCCAGAATTGCATGGCGACGACAACATGGTGGTGGATTCACTGTCGTCAGGAATGATCATCAAGCTTCGTGAAAGTGTACAGAAGATGGTGTCAGATAGATTTGAGGAGGAATGCTTGCACGTGTGCAGTAATTGGCGGCGGGAGTTTCTGAAAGAGTGTCTCTGGGCATTGGGGTTGCAGGATCAAGAGCTCAACGAGGAGGACATTAACAAGTCAGAGAAGATTGAGAGGCTGATAAAAGCTATGAACATAGCCACGAGGATACTCTTTCCCAATGAAGAAAGACTCTTCAATCGTGTCTTTAGGGGCTCCATTCTTAATGGGGAGTTTCATTTCAGGGAACTTTGCACGGAATTGGCTACTAGTCTGCTGAACTCTGCCCTTGCCATGGAAACTTGGAGCCATTTCTTGCGCAACACATTGCAGGAGTTGATACAAGAGTTTGAATCATTTACAACACTAATAAATATTGTAGTGCTCCTGATAAAGCAGAGATTGTGCATTTATGAGGCTTTGGAAGATGTATCACTCATTCCTGGTGGCGGGATTCATCCTATTACCCTTGAAGGGATGTACTGTATTTATTTGGTTTACAGAAATAGGGAAATTAGGAAACTTAGGCAAGATTTAAAGGAGGGAAGGATTCCAGCATCTTTGTACATAGACAAAGTGAGAATTCTGTTACAGAGTAGTTTGGACGAAAAGTCCAAAAATGGTAATAAGTTTGAAGTTTTGTACTACATTAAATCTCAACGCCGAAGTAGGGAGAATAAACTTAGACTAGGTTTAGATGAAATGATTTCACCTGTGTTGATTTACAGGATGATAGAGCTTTTAGAGAGCAGTTTAGAAGCCAACTCCAAAAATTACAAAAACCCTTCTTTGGGTTATGTTTTCATCATGAACAATCGGAGATTCATTGAAGTAGAGACAAAACTGAATGGACTGGGACTTGCTTTTGGAGATGACTGGCTCCACAAAAACACAAGAAAGTTCCAAGAAAACCTTGAGCTCTATCTAAGAAGCTCATGGAATAAGATTCTAGACCTTTTGAAGGTAGACATCAACCAACTAGAGCCTAGTGTTATAGCCGAGTTGATGAAAGACAACCTTTATTGGTTCAACGAACACTTTGATGAGACATGCAACATTCAGTCCGCATGGTCTGTCTGTGATGAGGAGCTAAGGGAACAAATAATAAAATCCATAGAAAACGTGTTGTTGCCAGCATATGGAAGTTTCCTTGGCACATTTGAGGAATTTGCTGGGAAGCATGCTTATAAATACATTAAATATGGAATGTTTGAGCGAGATAGCGAAAGTGAGCGATGGAGTGCCAGAGATCGCGGGAGAGAGATCGCCGCGAGGGCAAGATTGAGAGTGCGAGATAGCCAGAGCGCACGTAAGAGAGAGCTTCGCAAGACGCAACGAACCATGTCTATGCAGCATTCGTCTTCGTCTTTCCATTGTAGGTCGAGCAAGAAGGAGGCTTCACTGAGTTGCCATTGTGGAGAGAAGTGTGTGTTGAGGACGGCAAAAACACCGAAGAATCGAGGGAGACAATTCTGGGGTTGCCCTAAGTATAAGGTTGGATCTAAAAGTGTTGGATGCAACTACTTCAGATGGTTAGCTGATTGCGGTCATGACGATAGTGTTAGCTGTGAGGTGTTCAAAGCAAATGATCAGAGGTTGGTGAAGAGTGATAATAACATAGTTGGAGGAAAGGTCGAGGAAAAGTTTGTAGCTGTGCAGAAAGTCGTGATGGGTGTTGAAAGGTGGACAAAAATTTTGGTCCATGTTGTCAGTTTTTTATGTGTAATGAACATCATTGTGATTGTAATGTTGTTGGGAAGGACATGA 3282 0.4171 MPQDTSVTKGDEDSGFMVLKKENETLIDTISRHVDRYLKSNVANKIPTMELHADNNFVVDALLIGLINDLYETDTLIASLKGRVFKGASSPGDFAFTMVCRELNICLVHIANHLATILECENFTYYEDGELHPNICELMHKIRYVCTQRDNRSRQGLEEYTMFDKEGRLSPSLNVARIIATALQTLLKKQQSAHAHQNLDLATSAKGMEISVFCFIYRWPYILCFELLFQSFTWKLELVETWEHSNSRCLEAHTAFSALLMTSVYSFFLDKDLKQKADAYSLLSCVAFAIMSLGLSRLSQLGFEVDLLYFFCALLTVQLMKIKLWLVTVGGVFSYSLIVLRSNLDPQPRSGYHGLQQQDHVVLEIGSHSQPQGTSNSVTQVDSTQTIMASSQPHPVIDMVWPSRGIRQSASQVVSPQEGGAGGAPPENIYGTKECFMGCIEALKKENGSVLRAISMHVDKYLKASVLSGEQISVPELHGDDNMVVDSLSSGMIIKLRESVQKMVSDRFEEECLHVCSNWRREFLKECLWALGLQDQELNEEDINKSEKIERLIKAMNIATRILFPNEERLFNRVFRGSILNGEFHFRELCTELATSLLNSALAMETWSHFLRNTLQELIQEFESFTTLINIVVLLIKQRLCIYEALEDVSLIPGGGIHPITLEGMYCIYLVYRNREIRKLRQDLKEGRIPASLYIDKVRILLQSSLDEKSKNGNKFEVLYYIKSQRRSRENKLRLGLDEMISPVLIYRMIELLESSLEANSKNYKNPSLGYVFIMNNRRFIEVETKLNGLGLAFGDDWLHKNTRKFQENLELYLRSSWNKILDLLKVDINQLEPSVIAELMKDNLYWFNEHFDETCNIQSAWSVCDEELREQIIKSIENVLLPAYGSFLGTFEEFAGKHAYKYIKYGMFERDSESERWSARDRGREIAARARLRVRDSQSARKRELRKTQRTMSMQHSSSSFHCRSSKKEASLSCHCGEKCVLRTAKTPKNRGRQFWGCPKYKVGSKSVGCNYFRWLADCGHDDSVSCEVFKANDQRLVKSDNNIVGGKVEEKFVAVQKVVMGVERWTKILVHVVSFLCVMNIIVIVMLLGRT 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01361 1093 Pfam GRF zinc finger 974 1016 IPR010666 GO:0008270
Vimu1g01361 1093 Pfam Exo70 exocyst complex subunit 551 906 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vimu1g01361 1093 PANTHER EXOCYST COMPLEX PROTEIN EXO70 436 909 IPR004140 GO:0000145|GO:0006887
Vimu1g01361 1093 SUPERFAMILY Cullin repeat-like 468 907 IPR016159 -
Vimu1g01361 1093 ProSiteProfiles Zinc finger GRF-type profile. 975 1020 IPR010666 GO:0008270
Vimu1g01361 1093 Gene3D Exocyst complex component Exo70 429 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01361 Vimu-Chr1 11251276 11257956 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01361 471 908 EXO70 exocyst subunit family AT5G58430 34.958 7.56e-62 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01361 - - vra:106763388 1053.12