Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu1g01359 | ATGGCTTTGGCATTTACATTTGGGCACCTAAACTTCAAATACTTGTTTCAGCTAAGTCAGCACTCTATAGTAAGTGGTTTACCTTTGGTTAATATTCTTGAATCGAAATTGTCAGGAAAATTGGAGATTGTGTATTCATATGTATGTGGACCCATACAAACTGAAACTCTAAGAGGCAGCAGATATTTTGTGATATTCATTTATGACTGGACTAGAAAAACATGTTCATATCTACTCAAAAGGAAGAGTGAAGTTTTGGAGGTGTTTAAAAGGTTTAAACACATGGTTGAAAGGCAAAGTTATAGAAAGTTGAAAGTCTTAAGAATAGATGAAGGTGGAGAGGATAATCATGAGATGACTCCTCACAACACACCAGAGCATAATGGCACTGTAGAGAGGAAAAACCGCACTATATTAAATATGGTAAGGTGCATGCTGAAAAGCAAAGAGATGCCACAGTTCTTATGGGGAGAGGTGGTGTTGACTACAACCTACATTCTAAATAGAACACCTACTAAAAGGTTGAAGAATATTACTCCAGAGGAAGCCTGGAGTACCATCAAGCCAAATGTAAAGCATTTGGGAGTTTTTGGCTCGATTTGCTATAAACAGATTCCAGATCAGTTGAGAAGAAAACTGGATGATAAGGGAGTGCCACTAATTTTAATTGGTTATCATGCAACTGGTGGGTATAAGTTGTACAATCCAGTAACTGGACAAACAACTATAAGCAGAGATATGATAATTGATGAGGATATAGTTTGGGATTGGAAGTCTATAAATAAATATGATCCAATTGAAGAAAAGTCTACTGATCAAGGAGGAAACCTAACAAGATTCTCTAGGACATCACAACTGCCATCACATATGAAAGACTATGATCTGTTCTATGAGGCTACAGTAACTTCAGAAGGCAATCTTGTCCATTATGCACTTGTAGCTGAAGCTGAACCTGTTACTTTTGAGCAAGTTGCTTCAAATAATAAGTGGCTGAAAGCAACGCAAGAGGAGATAGATTCCATTGAGAAAAATCAAACTTGGGAACTGGCTAAGCTACCTGCAAATAAAAGGCCGATAGATTTTAAAGAGATATTATTAGATATAAGGTCAAGCTGGTTGCAAAGGGATTTCTACAAAAGGCTGGACTATGGTGAGGTGTATGCACCTGTGGCTAGGATGGAAACAATGAGACTTGTAGTGGCTTTAGCAAATCAGCTTGGTTGGTCATTGCACCAATTGGATGTGAAGGCAACTTTCCTAAACGGAAGGCTAGAAGAAGAGCAAGGAATGGTATATAGGTTGAAGAAAGCCTTGTATGAGCTAAAACAGGCCCCTAGAGCCTGGAATCAAAGGATTGATCAATTCATGGACAATATTGGTTTTGAGAAGTGTGCTTCAGAACATGGTGTCTATGTGCAGAATAGTCAAAGAGAAGGAAGAGTTGAAAGACTAATAATGTGTTTATATATGGATGATATGCTGGCTATTGGAAGTAATGAAGTGTTGATTCAGAATTTCAAACTACACATGCTGAGTAAGTTTGAAATGAGTGATTTAGGTAAACTAAACTACTTCCTTGGCATAGAGTTTGCTGAAACTGAGAAGGGGATAGTGATGCATCAGTCATGCTATGCTAAAGAAATGCTAAAGAAGGTTGAAATGCAGAAGTGTAATGCTGCAAATACACCTGTAGAATTAGACTTGAGACTTGAAACTGATCTAGAAGAGGAGGTTGTAGACGCTACTTTTTATCGAAGCATGGTAGGAAGCCTAAGATACTCGTGTAACACAAGGCCAGATGTGAGTTACAGTGTTGGTCTTGAAAAGCACAAGAGGTTATTTGTTCTTTCTTGGAAATTCACCAATATCATAGAGTTCAACCAAGGAACTAGCCTTAAGCTCCTAAAGCAAAGCTTGCTTAAGAAACAACAGAGTGCTCATGCTCATCAAAATTGGGAGTTGGCTACGTCAGCCAAAGCTCACACAGCATTTTCTATTTTGCTTATCACTTCTGTATACTCTTTTTTCCTTGATAAAGATCTGAAACAGAAAACAGATGCCTATAGTCTGCTTTCCCGTGTGGCTTTTGCTATCATGTCTCTAGGCTTGTCTAGGCTGAGTCAGTTAGGATTTGAGGTTGATCTCCTGTATTTCTTTTGTGGACTTCTGACCGTACAACTCATGAAAATAAAACCGTGGTTAGTCACTGTTGGAGGAGCTTTCAGTTATTCCCTCATCCTTCTTCGTTCCAATTTGGATCTTCAACCAAGAAGTGGGTATCATGGACTTCAACACCAAGATCATGTAGTGCTTGAAATTGGTTCTCATTCACAACCACAAGGAACCAATAATAGTGTTACTCAAGGCACAGTTTCACCTCAAGAGAGTGGTACTGGTCGTGCTCCTCCAGAAAACATTTATGGTACCAAGGAATGCTTCATGGGTTGTATAGAGGCTCTTGAGAAGGAGAATGGGAGCGTTATCAGAGCAATTTCCATGCATGTAGACGAATATCTTAAAGCTTATCTTCCCAGTGACGACCATAGTTTAGGGTCAGTATTGCATCGCGACGACAACATTTTTGTGGATTCATTGTTGTCAGGAATGGTCAGCAAGCTTCGTAAAAGTGTAGAGAAGATGGTGTCAGATGGATTTGAGGAGGAATGCTTGCACGTGTACAGTAATTGGCGGAGGGAGTTTCTGAAAGAGAGTCTCTGGACATTAGGGTTGCAGGTTCAAGAGCTCCACGGGGAGGACATTAACAAGTGGGAGAAGATTGAGAGGTTGATAAAAGCTATGAACATAGCTGCGAGGATACTCTTTCCCAATGAAAAAAGACTCTTCGATCGTGTCTTTAGCGGCTCAATTCGCAATGGGGAGTTTCATTTCAGGGAACTTTGCACGGAATTGGTTACTGGTCTGCTGAACTCTGCCCTTGCCTTGGCAACTTGGAGCCATTTCATGCGCTTCACATTGCTCTGGTTGATACAAGACTTTGAACAATTTACAACACTCAGCAATACTGCCGTGCACCTAATACGGCAGAGATTGAGCATTTATGAGATTTTGGATAAGGTATCACGCTTTTCCCTTGGTGAGCTTTCTTCAGCTGTGCCTACTTACAGGTTGATAGAGCTTTTAGAGAGCAGTTCAGAAGCCTACTCCAAAAATTACGAAAACCCTTCTTTGGGTTATATTTCCATCATGATGGTCCTTAGATTCATTGAAGCACAGACAGAACGGAGATTCATTGAAGTAGAGACAAAATGGAATAGAATTTTTGATGATCACTGGCACTACAAAAGTAGAGCAAAGATCCAAGAAAACCTTATGCTCTATCTTAGAAGCTCATGGAACAAGATAATGGACCTTTTGAAGGTAGACATCAATCAGTCAGAGCCTAGTGTCGTAGCCGAGTTGATGAAAGACAACCTTTATTGCTTCAACGAACACTTTGATGAGACATGCTACATTGAGTCTGCATGGTCTGTCTCTGATGAGGTGCTAAGGGAACAAATAATAGAATCCGTAGAAAACATGCTGTGTCCAGTATATGCAAGTTTCATTTGCACATTTGAGGAAATTGTTGGGAAGCATGCTTATAAATACATTAAGTATGAAATGTTCGAGGTTCAAGATCGACTCAACAAATTGTTTCTTTTAAGGGAGTAG | 3672 | 0.3976 | MALAFTFGHLNFKYLFQLSQHSIVSGLPLVNILESKLSGKLEIVYSYVCGPIQTETLRGSRYFVIFIYDWTRKTCSYLLKRKSEVLEVFKRFKHMVERQSYRKLKVLRIDEGGEDNHEMTPHNTPEHNGTVERKNRTILNMVRCMLKSKEMPQFLWGEVVLTTTYILNRTPTKRLKNITPEEAWSTIKPNVKHLGVFGSICYKQIPDQLRRKLDDKGVPLILIGYHATGGYKLYNPVTGQTTISRDMIIDEDIVWDWKSINKYDPIEEKSTDQGGNLTRFSRTSQLPSHMKDYDLFYEATVTSEGNLVHYALVAEAEPVTFEQVASNNKWLKATQEEIDSIEKNQTWELAKLPANKRPIDFKEILLDIRSSWLQRDFYKRLDYGEVYAPVARMETMRLVVALANQLGWSLHQLDVKATFLNGRLEEEQGMVYRLKKALYELKQAPRAWNQRIDQFMDNIGFEKCASEHGVYVQNSQREGRVERLIMCLYMDDMLAIGSNEVLIQNFKLHMLSKFEMSDLGKLNYFLGIEFAETEKGIVMHQSCYAKEMLKKVEMQKCNAANTPVELDLRLETDLEEEVVDATFYRSMVGSLRYSCNTRPDVSYSVGLEKHKRLFVLSWKFTNIIEFNQGTSLKLLKQSLLKKQQSAHAHQNWELATSAKAHTAFSILLITSVYSFFLDKDLKQKTDAYSLLSRVAFAIMSLGLSRLSQLGFEVDLLYFFCGLLTVQLMKIKPWLVTVGGAFSYSLILLRSNLDLQPRSGYHGLQHQDHVVLEIGSHSQPQGTNNSVTQGTVSPQESGTGRAPPENIYGTKECFMGCIEALEKENGSVIRAISMHVDEYLKAYLPSDDHSLGSVLHRDDNIFVDSLLSGMVSKLRKSVEKMVSDGFEEECLHVYSNWRREFLKESLWTLGLQVQELHGEDINKWEKIERLIKAMNIAARILFPNEKRLFDRVFSGSIRNGEFHFRELCTELVTGLLNSALALATWSHFMRFTLLWLIQDFEQFTTLSNTAVHLIRQRLSIYEILDKVSRFSLGELSSAVPTYRLIELLESSSEAYSKNYENPSLGYISIMMVLRFIEAQTERRFIEVETKWNRIFDDHWHYKSRAKIQENLMLYLRSSWNKIMDLLKVDINQSEPSVVAELMKDNLYCFNEHFDETCYIESAWSVSDEVLREQIIESVENMLCPVYASFICTFEEIVGKHAYKYIKYEMFEVQDRLNKLFLLRE | 1223 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu1g01359 | 1223 | MobiDBLite | consensus disorder prediction | 776 | 799 | - | - | |
| Vimu1g01359 | 1223 | SUPERFAMILY | DNA/RNA polymerases | 400 | 622 | IPR043502 | - | |
| Vimu1g01359 | 1223 | Pfam | Exo70 exocyst complex subunit | 1042 | 1216 | IPR046364 | GO:0000145|GO:0005546|GO:0006887 | |
| Vimu1g01359 | 1223 | PANTHER | GAG-POL-RELATED RETROTRANSPOSON | 81 | 685 | - | - | |
| Vimu1g01359 | 1223 | Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) | 344 | 564 | IPR013103 | - | |
| Vimu1g01359 | 1223 | Coils | Coil | 1221 | 1223 | - | - | |
| Vimu1g01359 | 1223 | Gene3D | Exocyst complex component Exo70 | 805 | 997 | - | - | |
| Vimu1g01359 | 1223 | Gene3D | Exocyst complex component Exo70 | 1021 | 1220 | - | - | |
| Vimu1g01359 | 1223 | SUPERFAMILY | Ribonuclease H-like | 46 | 182 | IPR012337 | - | |
| Vimu1g01359 | 1223 | ProSiteProfiles | Integrase catalytic domain profile. | 117 | 188 | IPR001584 | GO:0015074 |
Showing 1 to 10 of 13 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu1g01359 | - | - | vra:106763388 | 685.641 |
Showing 1 to 1 of 1 entries