Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01359 ATGGCTTTGGCATTTACATTTGGGCACCTAAACTTCAAATACTTGTTTCAGCTAAGTCAGCACTCTATAGTAAGTGGTTTACCTTTGGTTAATATTCTTGAATCGAAATTGTCAGGAAAATTGGAGATTGTGTATTCATATGTATGTGGACCCATACAAACTGAAACTCTAAGAGGCAGCAGATATTTTGTGATATTCATTTATGACTGGACTAGAAAAACATGTTCATATCTACTCAAAAGGAAGAGTGAAGTTTTGGAGGTGTTTAAAAGGTTTAAACACATGGTTGAAAGGCAAAGTTATAGAAAGTTGAAAGTCTTAAGAATAGATGAAGGTGGAGAGGATAATCATGAGATGACTCCTCACAACACACCAGAGCATAATGGCACTGTAGAGAGGAAAAACCGCACTATATTAAATATGGTAAGGTGCATGCTGAAAAGCAAAGAGATGCCACAGTTCTTATGGGGAGAGGTGGTGTTGACTACAACCTACATTCTAAATAGAACACCTACTAAAAGGTTGAAGAATATTACTCCAGAGGAAGCCTGGAGTACCATCAAGCCAAATGTAAAGCATTTGGGAGTTTTTGGCTCGATTTGCTATAAACAGATTCCAGATCAGTTGAGAAGAAAACTGGATGATAAGGGAGTGCCACTAATTTTAATTGGTTATCATGCAACTGGTGGGTATAAGTTGTACAATCCAGTAACTGGACAAACAACTATAAGCAGAGATATGATAATTGATGAGGATATAGTTTGGGATTGGAAGTCTATAAATAAATATGATCCAATTGAAGAAAAGTCTACTGATCAAGGAGGAAACCTAACAAGATTCTCTAGGACATCACAACTGCCATCACATATGAAAGACTATGATCTGTTCTATGAGGCTACAGTAACTTCAGAAGGCAATCTTGTCCATTATGCACTTGTAGCTGAAGCTGAACCTGTTACTTTTGAGCAAGTTGCTTCAAATAATAAGTGGCTGAAAGCAACGCAAGAGGAGATAGATTCCATTGAGAAAAATCAAACTTGGGAACTGGCTAAGCTACCTGCAAATAAAAGGCCGATAGATTTTAAAGAGATATTATTAGATATAAGGTCAAGCTGGTTGCAAAGGGATTTCTACAAAAGGCTGGACTATGGTGAGGTGTATGCACCTGTGGCTAGGATGGAAACAATGAGACTTGTAGTGGCTTTAGCAAATCAGCTTGGTTGGTCATTGCACCAATTGGATGTGAAGGCAACTTTCCTAAACGGAAGGCTAGAAGAAGAGCAAGGAATGGTATATAGGTTGAAGAAAGCCTTGTATGAGCTAAAACAGGCCCCTAGAGCCTGGAATCAAAGGATTGATCAATTCATGGACAATATTGGTTTTGAGAAGTGTGCTTCAGAACATGGTGTCTATGTGCAGAATAGTCAAAGAGAAGGAAGAGTTGAAAGACTAATAATGTGTTTATATATGGATGATATGCTGGCTATTGGAAGTAATGAAGTGTTGATTCAGAATTTCAAACTACACATGCTGAGTAAGTTTGAAATGAGTGATTTAGGTAAACTAAACTACTTCCTTGGCATAGAGTTTGCTGAAACTGAGAAGGGGATAGTGATGCATCAGTCATGCTATGCTAAAGAAATGCTAAAGAAGGTTGAAATGCAGAAGTGTAATGCTGCAAATACACCTGTAGAATTAGACTTGAGACTTGAAACTGATCTAGAAGAGGAGGTTGTAGACGCTACTTTTTATCGAAGCATGGTAGGAAGCCTAAGATACTCGTGTAACACAAGGCCAGATGTGAGTTACAGTGTTGGTCTTGAAAAGCACAAGAGGTTATTTGTTCTTTCTTGGAAATTCACCAATATCATAGAGTTCAACCAAGGAACTAGCCTTAAGCTCCTAAAGCAAAGCTTGCTTAAGAAACAACAGAGTGCTCATGCTCATCAAAATTGGGAGTTGGCTACGTCAGCCAAAGCTCACACAGCATTTTCTATTTTGCTTATCACTTCTGTATACTCTTTTTTCCTTGATAAAGATCTGAAACAGAAAACAGATGCCTATAGTCTGCTTTCCCGTGTGGCTTTTGCTATCATGTCTCTAGGCTTGTCTAGGCTGAGTCAGTTAGGATTTGAGGTTGATCTCCTGTATTTCTTTTGTGGACTTCTGACCGTACAACTCATGAAAATAAAACCGTGGTTAGTCACTGTTGGAGGAGCTTTCAGTTATTCCCTCATCCTTCTTCGTTCCAATTTGGATCTTCAACCAAGAAGTGGGTATCATGGACTTCAACACCAAGATCATGTAGTGCTTGAAATTGGTTCTCATTCACAACCACAAGGAACCAATAATAGTGTTACTCAAGGCACAGTTTCACCTCAAGAGAGTGGTACTGGTCGTGCTCCTCCAGAAAACATTTATGGTACCAAGGAATGCTTCATGGGTTGTATAGAGGCTCTTGAGAAGGAGAATGGGAGCGTTATCAGAGCAATTTCCATGCATGTAGACGAATATCTTAAAGCTTATCTTCCCAGTGACGACCATAGTTTAGGGTCAGTATTGCATCGCGACGACAACATTTTTGTGGATTCATTGTTGTCAGGAATGGTCAGCAAGCTTCGTAAAAGTGTAGAGAAGATGGTGTCAGATGGATTTGAGGAGGAATGCTTGCACGTGTACAGTAATTGGCGGAGGGAGTTTCTGAAAGAGAGTCTCTGGACATTAGGGTTGCAGGTTCAAGAGCTCCACGGGGAGGACATTAACAAGTGGGAGAAGATTGAGAGGTTGATAAAAGCTATGAACATAGCTGCGAGGATACTCTTTCCCAATGAAAAAAGACTCTTCGATCGTGTCTTTAGCGGCTCAATTCGCAATGGGGAGTTTCATTTCAGGGAACTTTGCACGGAATTGGTTACTGGTCTGCTGAACTCTGCCCTTGCCTTGGCAACTTGGAGCCATTTCATGCGCTTCACATTGCTCTGGTTGATACAAGACTTTGAACAATTTACAACACTCAGCAATACTGCCGTGCACCTAATACGGCAGAGATTGAGCATTTATGAGATTTTGGATAAGGTATCACGCTTTTCCCTTGGTGAGCTTTCTTCAGCTGTGCCTACTTACAGGTTGATAGAGCTTTTAGAGAGCAGTTCAGAAGCCTACTCCAAAAATTACGAAAACCCTTCTTTGGGTTATATTTCCATCATGATGGTCCTTAGATTCATTGAAGCACAGACAGAACGGAGATTCATTGAAGTAGAGACAAAATGGAATAGAATTTTTGATGATCACTGGCACTACAAAAGTAGAGCAAAGATCCAAGAAAACCTTATGCTCTATCTTAGAAGCTCATGGAACAAGATAATGGACCTTTTGAAGGTAGACATCAATCAGTCAGAGCCTAGTGTCGTAGCCGAGTTGATGAAAGACAACCTTTATTGCTTCAACGAACACTTTGATGAGACATGCTACATTGAGTCTGCATGGTCTGTCTCTGATGAGGTGCTAAGGGAACAAATAATAGAATCCGTAGAAAACATGCTGTGTCCAGTATATGCAAGTTTCATTTGCACATTTGAGGAAATTGTTGGGAAGCATGCTTATAAATACATTAAGTATGAAATGTTCGAGGTTCAAGATCGACTCAACAAATTGTTTCTTTTAAGGGAGTAG 3672 0.3976 MALAFTFGHLNFKYLFQLSQHSIVSGLPLVNILESKLSGKLEIVYSYVCGPIQTETLRGSRYFVIFIYDWTRKTCSYLLKRKSEVLEVFKRFKHMVERQSYRKLKVLRIDEGGEDNHEMTPHNTPEHNGTVERKNRTILNMVRCMLKSKEMPQFLWGEVVLTTTYILNRTPTKRLKNITPEEAWSTIKPNVKHLGVFGSICYKQIPDQLRRKLDDKGVPLILIGYHATGGYKLYNPVTGQTTISRDMIIDEDIVWDWKSINKYDPIEEKSTDQGGNLTRFSRTSQLPSHMKDYDLFYEATVTSEGNLVHYALVAEAEPVTFEQVASNNKWLKATQEEIDSIEKNQTWELAKLPANKRPIDFKEILLDIRSSWLQRDFYKRLDYGEVYAPVARMETMRLVVALANQLGWSLHQLDVKATFLNGRLEEEQGMVYRLKKALYELKQAPRAWNQRIDQFMDNIGFEKCASEHGVYVQNSQREGRVERLIMCLYMDDMLAIGSNEVLIQNFKLHMLSKFEMSDLGKLNYFLGIEFAETEKGIVMHQSCYAKEMLKKVEMQKCNAANTPVELDLRLETDLEEEVVDATFYRSMVGSLRYSCNTRPDVSYSVGLEKHKRLFVLSWKFTNIIEFNQGTSLKLLKQSLLKKQQSAHAHQNWELATSAKAHTAFSILLITSVYSFFLDKDLKQKTDAYSLLSRVAFAIMSLGLSRLSQLGFEVDLLYFFCGLLTVQLMKIKPWLVTVGGAFSYSLILLRSNLDLQPRSGYHGLQHQDHVVLEIGSHSQPQGTNNSVTQGTVSPQESGTGRAPPENIYGTKECFMGCIEALEKENGSVIRAISMHVDEYLKAYLPSDDHSLGSVLHRDDNIFVDSLLSGMVSKLRKSVEKMVSDGFEEECLHVYSNWRREFLKESLWTLGLQVQELHGEDINKWEKIERLIKAMNIAARILFPNEKRLFDRVFSGSIRNGEFHFRELCTELVTGLLNSALALATWSHFMRFTLLWLIQDFEQFTTLSNTAVHLIRQRLSIYEILDKVSRFSLGELSSAVPTYRLIELLESSSEAYSKNYENPSLGYISIMMVLRFIEAQTERRFIEVETKWNRIFDDHWHYKSRAKIQENLMLYLRSSWNKIMDLLKVDINQSEPSVVAELMKDNLYCFNEHFDETCYIESAWSVSDEVLREQIIESVENMLCPVYASFICTFEEIVGKHAYKYIKYEMFEVQDRLNKLFLLRE 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01359 1223 MobiDBLite consensus disorder prediction 776 799 - -
Vimu1g01359 1223 SUPERFAMILY DNA/RNA polymerases 400 622 IPR043502 -
Vimu1g01359 1223 Pfam Exo70 exocyst complex subunit 1042 1216 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vimu1g01359 1223 PANTHER GAG-POL-RELATED RETROTRANSPOSON 81 685 - -
Vimu1g01359 1223 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 344 564 IPR013103 -
Vimu1g01359 1223 Coils Coil 1221 1223 - -
Vimu1g01359 1223 Gene3D Exocyst complex component Exo70 805 997 - -
Vimu1g01359 1223 Gene3D Exocyst complex component Exo70 1021 1220 - -
Vimu1g01359 1223 SUPERFAMILY Ribonuclease H-like 46 182 IPR012337 -
Vimu1g01359 1223 ProSiteProfiles Integrase catalytic domain profile. 117 188 IPR001584 GO:0015074
Vimu1g01359 1223 MobiDBLite consensus disorder prediction 776 802 - -
Vimu1g01359 1223 Gene3D - 36 196 IPR036397 GO:0003676
Vimu1g01359 1223 SUPERFAMILY Cullin repeat-like 837 1219 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01359 Vimu-Chr1 11223981 11229423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01359 857 1219 EXO70 exocyst subunit family AT5G58430 33.333 3.58e-51 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01359 - - vra:106763388 685.641