Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01346 ATGGCTTCTTCTACTGGTAGTTTAGACACCTCTGCAAGTGCAAACTCCTTCACCAACTTCACCTTCGCCACGCACCCCTTCATGACCACTTCTTTCTCTGACCTCCTTGCTTCTCCCACAGACAACAACAAGTCTCAGGGTGCTTTGTCTGAAAAAAATGCCTCTGGTGTGCCCAAATTCAAGTCCACTCCACCTCCTTCTTTGCCTCTTTCCCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCACCTGGTTTGAGTCCTGCTGAGCTTCTTGATTCTCCAGTTCTCCTTAACTCTTCTAATATACTGCCATCTCCAACAACTGGAGCATTTGTTTCTCAGAGCTTCAATTGGAAGAGCAGTTCAGGGGGAAACCAGCAAATTGTCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAGACCCAGACGAGGCCTCCTGCTTCATCCACATTAACATATCAATCTTCAAATGTTGCAGTTCAAGCACAAAATCCATGGAATTTTCAAGATACCACAAAGCAAGATAGTTTTTCTTCAGGGAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCACAGTTTCCCTCCTGAGATTGCCAGTGTTCAAACTAACCATAGCAATGGGTTTCAATCTGATTTTGGAAATTATCCCCCACAATCTCAGACCTTAAACAGAAAGTCAGATGATGGATACAATTGGAGGAAGTATGGCCAAAAACAAGTGAAAGGGAGTGAGAATCCAAGAAGTTATTACAAATGCACATACCCCAATTGCCCTACGAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCAAAGCCTCAATCTACTAGGAGAAACTCATCATCGTCCTCTTCTCTTCCAATCCCTCCTTCAAATCCCATCAGCAATGAAATCCAAGATCAATCATATGCTACTCATGGTAGTGGGCAAATGGATTCTGCCGCCACCCCAGATAACTCATCTATATCAATAGGAGATGATGATTTTGAGCAGAGTTCTCAGAAGTGTAAATCAGGTGGAGATGAATACGATGAAGATGAACCTGATGCAAAAAGATGGAAAGTTGAAGGAGAAAATGAGGGTATGTCAGCGCCTGGTAGTAGAACAGTAAGAGAACCTCGAGTTGTGGTTCAGACAACCAGTGACATTGATATCTTAGACGATGGGTACAGATGGAGAAAATATGGGCAGAAAGTAGTAAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCCAGGATGTCCAGTGAGAAAGCACGTGGAACGAGCCTCACACGACCTCAGAGCCGTGATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGTAGCCATTCTGTTAACAGACCCCTGCCAAACAATGCTGCAAACCCCACCACAGCAGCCACTGCCATAAGGCCATTGCCAGTGATCCATCACACTGACAACTCGGTTCAAAGCCAAAGGCCACAAGCACCACCATCAGGGCAATCACCCTTCACCCTAGAGATGCTACAAAGTCCAGGAAATTTTGGATTCTCAAGTTTTGGAAATCCAATGGGTTCTTACATGAATCACCAACAATTATCTGACAATGTTTTCTCCTCCAGAACCAAGGAGGAGCCCAGAGATGACTTGTTCCTTGAATCTCTCCTATGCTGA 1722 0.4419 MASSTGSLDTSASANSFTNFTFATHPFMTTSFSDLLASPTDNNKSQGALSEKNASGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVSQSFNWKSSSGGNQQIVKEEDKSFSNFSFQTQTRPPASSTLTYQSSNVAVQAQNPWNFQDTTKQDSFSSGKSMMKTENSSSMHSFPPEIASVQTNHSNGFQSDFGNYPPQSQTLNRKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLPIPPSNPISNEIQDQSYATHGSGQMDSAATPDNSSISIGDDDFEQSSQKCKSGGDEYDEDEPDAKRWKVEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPNNAANPTTAATAIRPLPVIHHTDNSVQSQRPQAPPSGQSPFTLEMLQSPGNFGFSSFGNPMGSYMNHQQLSDNVFSSRTKEEPRDDLFLESLLC 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01346 573 MobiDBLite consensus disorder prediction 33 52 - -
Vimu1g01346 573 Gene3D WRKY domain 391 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 MobiDBLite consensus disorder prediction 460 486 - -
Vimu1g01346 573 MobiDBLite consensus disorder prediction 282 390 - -
Vimu1g01346 573 Gene3D WRKY domain 220 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 ProSiteProfiles WRKY domain profile. 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 Pfam WRKY DNA -binding domain 405 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 93 499 IPR044810 GO:0003700
Vimu1g01346 573 MobiDBLite consensus disorder prediction 348 376 - -
Vimu1g01346 573 MobiDBLite consensus disorder prediction 173 232 - -
Vimu1g01346 573 MobiDBLite consensus disorder prediction 287 347 - -
Vimu1g01346 573 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 FunFam WRKY transcription factor 223 292 - -
Vimu1g01346 573 MobiDBLite consensus disorder prediction 33 72 - -
Vimu1g01346 573 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g01346 573 FunFam WRKY transcription factor 33 391 457 - -
Vimu1g01346 573 MobiDBLite consensus disorder prediction 173 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01346 Vimu-Chr1 11062540 11065372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01346 230 572 WRKY Transcription Factor Family AT2G38470 55.525 4.59e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g01346 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01346 K13424 - gmx:100127393 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02102 2 15726727 15729499 Vimu1g01346 1 11062540 11065372 PCT