Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01336 ATGTCCCTTAAATGCGTAGTTGACTTAGGCATACCAGATGTCATACATAACTATGGCCAACCCATGCCACTTTCAAACCTCATTGCTTCACTACCAATCCATCCATCCAAAACCTTATTCATCCATCGCTTGATGCGAATCATGGTCTCCCTTGATCCATTTATGACAAAGCCATTGCATCAGTTTTCTGATTGGTTCAAAAGTGGTGACCTTACACCCTTTGAAACTGCACACGGAATGTCGTTTTGGGATTATGCTGGCTGTGACAAGAAAGTTAATCACTTATTCAATGATGCCATGGAGAATGACGCTCGATTGATCTCTAGTTTGATGATTGAGAAGTGCAAGGGAACGTTCACAGGATTGGAGTCATTGGTTGATGTTGGAGGAGGCACAGGGACCATGGCAAAGGCCATTGCGAAATCATTCCCAAAGATTCAATGTATTGTATTAGATCTCCCACATGTTGTTGCAGGCTTGCAAGGTGCTGAAAACCTAAAATACGTTGGAGGGGACATGTTTCAAGCTATTCCTCCAGCTGATGCCATTCTTTTGAAGTGGATAATGCATGACTGGAGTGATGAGGAATGCATGAAGATACTGAAGAAGTGCAAGGAAGCAATCACAAAGAAAGGTAAGAAAGGGAAGGTGATCATCATAGAGACGGTGATGGATGATGAAAAGAGAGATGATGATGATGAATTTGTAGAAACCCAACTCTTGTTTGATATTTTAATGATGGTCTCCTTACCTGGAAAAGAGAGAAACAAGAAGGAATGGGTGAAATTGATTTCCTCTACTGGTTTCAGTGAGTGTAAGATAACTCCAGTCTTGGGATTAAGATATCTCATTGAGATCTATCCATAG 867 0.4129 MSLKCVVDLGIPDVIHNYGQPMPLSNLIASLPIHPSKTLFIHRLMRIMVSLDPFMTKPLHQFSDWFKSGDLTPFETAHGMSFWDYAGCDKKVNHLFNDAMENDARLISSLMIEKCKGTFTGLESLVDVGGGTGTMAKAIAKSFPKIQCIVLDLPHVVAGLQGAENLKYVGGDMFQAIPPADAILLKWIMHDWSDEECMKILKKCKEAITKKGKKGKVIIIETVMDDEKRDDDDEFVETQLLFDILMMVSLPGKERNKKEWVKLISSTGFSECKITPVLGLRYLIEIYP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01336 288 Gene3D Vaccinia Virus protein VP39 41 288 IPR029063 -
Vimu1g01336 288 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 288 IPR016461 GO:0008168
Vimu1g01336 288 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 286 IPR029063 -
Vimu1g01336 288 CDD AdoMet_MTases 125 208 - -
Vimu1g01336 288 Pfam Dimerisation domain 1 49 IPR012967 GO:0046983
Vimu1g01336 288 SUPERFAMILY "Winged helix" DNA-binding domain 1 56 IPR036390 -
Vimu1g01336 288 PANTHER O-METHYLTRANSFERASE 1 271 IPR016461 GO:0008168
Vimu1g01336 288 Pfam O-methyltransferase domain 61 270 IPR001077 GO:0008171
Vimu1g01336 288 FunFam O-methyltransferase ZRP4 37 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01336 Vimu-Chr1 10928446 10929650 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01336 1 274 Monolignol Biosynthesis Gene Families AT5G54160 32.087 1.55e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01336 - K16040 gmx:100807238 431.024