Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01334 ATGCAAGAAATTATGGAATCCAATGACGCGAAACTACTGAGGCCTCAAACACACATATGGAATCATATTTTTAACTTCATAAACTCCATGTCCCTTAAGTGTGTTGTTGATTTAGGCATAGCAGACATCATACACAACCATGGCCAACCCATCTCACTCTCAAACCTCATTGCTTCACTTCCAATTCACTCTTCCAAAACTCATTTCATCCCTCGCTTGATGCGAATCATGGTCCATTCTGGCTTCTTCTCTCAACTCAATCACACCGACAACGACCTTGAAGTCGAGTATGCACTCACTGATGCCTCTTTGCTTCTGGTTAAGAGCCATGAAATGAGTCTGGCACCTTTCCTGCAGGCCATGCTTGATCCAGTTTTAACAAATCCGTGGACTCAGTTTTCTAGTTGGTTCAAAAATGGTATTATTACACCCTTTGAAATGGCACATGGGAAATCGTTTTGGGAGTATGCTGGCAGTGATCCCAGAATTAACATCTTATTCAATGATGCCATGGCAAGTGATGCTCAACTAATCACTAGTTCGGTGATTGAGAAATGCAAAGGGGTGTTCATGGGATTGGAGTCATTGGTTGATGTTGGGGGAGGTACAGGAACCATGGGAAAGGCCATTGCCACATCCTTCCCTCAGTTGGAATGCATCGTATTTGATCTTCCACATGTTGTTTCTGGCTTGCAAGGAAGTGAAAACCTCAAATATGTTGGAGGGGACATGTTTGAGGAGATTCCTCCAACAAATGCCATTTTGTTGAAGTGCATATTACATGACTGGAACGATGAGGAGTGTGTGAGAATATTGAAGAAATGCAAGGAAGCTATATCTAAGAAAGGGAAAGAAGGAAAGGTGATAATCATAGACATGGTGATGGATAATGAAGTGAAAGATGAAGAATATGTTGAAACACAACTCTTCTTTGATATGTTGATGGTGATGGTCAACGGAAAAGAGAGAAACAAAAAAGAGTGGGTTAAGCTGTTTTCCTCTGCTGGTTTCAATAACTATGACATAACTCCCGTTTTGGGCATAAGGTCTCTCATTCAGATCTATCCATAG 1071 0.4146 MQEIMESNDAKLLRPQTHIWNHIFNFINSMSLKCVVDLGIADIIHNHGQPISLSNLIASLPIHSSKTHFIPRLMRIMVHSGFFSQLNHTDNDLEVEYALTDASLLLVKSHEMSLAPFLQAMLDPVLTNPWTQFSSWFKNGIITPFEMAHGKSFWEYAGSDPRINILFNDAMASDAQLITSSVIEKCKGVFMGLESLVDVGGGTGTMGKAIATSFPQLECIVFDLPHVVSGLQGSENLKYVGGDMFEEIPPTNAILLKCILHDWNDEECVRILKKCKEAISKKGKEGKVIIIDMVMDNEVKDEEYVETQLFFDMLMVMVNGKERNKKEWVKLFSSAGFNNYDITPVLGIRSLIQIYP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01334 356 PANTHER O-METHYLTRANSFERASE 19 339 IPR016461 GO:0008168
Vimu1g01334 356 Pfam O-methyltransferase domain 130 338 IPR001077 GO:0008171
Vimu1g01334 356 SUPERFAMILY "Winged helix" DNA-binding domain 10 110 IPR036390 -
Vimu1g01334 356 FunFam O-methyltransferase ZRP4 108 356 - -
Vimu1g01334 356 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vimu1g01334 356 Gene3D - 2 106 IPR036388 -
Vimu1g01334 356 Gene3D Vaccinia Virus protein VP39 107 356 IPR029063 -
Vimu1g01334 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Vimu1g01334 356 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Vimu1g01334 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
Vimu1g01334 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 352 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01334 Vimu-Chr1 10878415 10880239 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01334 30 342 Monolignol Biosynthesis Gene Families AT5G54160 32.915 7.94e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01334 - K16040 gmx:100807238 572.007