Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01331 ATGGGAAAGGCCATTGCCGAATCCTTCCCTCAGTTGGAATGCATTGTATTTGATCTTCCACGTGTTGTTTCTGGCTTGCAAGGAAGTGAAAACCTTAAATATGTTGGAGGGGACATGTTTGAGGCAATTCCTCCGGCCGATGCCATTTTGTTTAAGTGTGTGAGAATATTGAAGAAATGCAAGGAAGCTATATCTAAGAAAGGGAAAGAAGGAAAGGTGATAGACATGGTGATGGATAATGAACTTAAAGATGAAGAATATGTTGAAACACAGCTCCTCGGTGATATGTTGATGATGGTGTTGGTGAACGGAAAAGAGAGAAACGAAAAAGAGTGGGTTAAGCTGTTTTCCTCTGCTGGTTTCAATAACTACGACATAACTCCCGCTTTGGGCTCAAGGTCTCTCATTCAGATCTATCCATAG 423 0.4161 MGKAIAESFPQLECIVFDLPRVVSGLQGSENLKYVGGDMFEAIPPADAILFKCVRILKKCKEAISKKGKEGKVIDMVMDNELKDEEYVETQLLGDMLMMVLVNGKERNEKEWVKLFSSAGFNNYDITPALGSRSLIQIYP 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01331 140 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 140 IPR016461 GO:0008168
Vimu1g01331 140 Pfam O-methyltransferase domain 3 122 IPR001077 GO:0008171
Vimu1g01331 140 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 3 136 IPR029063 -
Vimu1g01331 140 PANTHER O-METHYLTRANSFERASE 3 123 IPR016461 GO:0008168
Vimu1g01331 140 Gene3D Vaccinia Virus protein VP39 1 140 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01331 Vimu-Chr1 10837941 10839291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01331 5 140 Monolignol Biosynthesis Gene Families AT1G51990 34.459 7.84e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01331 - - vra:106764465 238.424