LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01331	ATGGGAAAGGCCATTGCCGAATCCTTCCCTCAGTTGGAATGCATTGTATTTGATCTTCCACGTGTTGTTTCTGGCTTGCAAGGAAGTGAAAACCTTAAATATGTTGGAGGGGACATGTTTGAGGCAATTCCTCCGGCCGATGCCATTTTGTTTAAGTGTGTGAGAATATTGAAGAAATGCAAGGAAGCTATATCTAAGAAAGGGAAAGAAGGAAAGGTGATAGACATGGTGATGGATAATGAACTTAAAGATGAAGAATATGTTGAAACACAGCTCCTCGGTGATATGTTGATGATGGTGTTGGTGAACGGAAAAGAGAGAAACGAAAAAGAGTGGGTTAAGCTGTTTTCCTCTGCTGGTTTCAATAACTACGACATAACTCCCGCTTTGGGCTCAAGGTCTCTCATTCAGATCTATCCATAG	423	0.4161	MGKAIAESFPQLECIVFDLPRVVSGLQGSENLKYVGGDMFEAIPPADAILFKCVRILKKCKEAISKKGKEGKVIDMVMDNELKDEEYVETQLLGDMLMMVLVNGKERNEKEWVKLFSSAGFNNYDITPALGSRSLIQIYP	140

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g01331	140	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	1	140	IPR016461	GO:0008168
	Vimu1g01331	140	Pfam	O-methyltransferase domain	3	122	IPR001077	GO:0008171
	Vimu1g01331	140	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	3	136	IPR029063	-
	Vimu1g01331	140	PANTHER	O-METHYLTRANSFERASE	3	123	IPR016461	GO:0008168
	Vimu1g01331	140	Gene3D	Vaccinia Virus protein VP39	1	140	IPR029063	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01331	Vimu-Chr1	10837941	10839291	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01331	5	140	Monolignol Biosynthesis Gene Families	AT1G51990	34.459	7.84e-19	79.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01331	-		-	vra:106764465	238.424

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