Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01330 ATGGAATCCAATGACGCGAAACTACTGAGGGCTCAAACACACATATGGAATCATATTTTTAACTTCATAAACTCCATGTCCCTTAAGTGTGTTGTTGATTTAGGCATAGCAGACATCATACACAACCATGGCCAACCCATCTCACTCTCAAACCTCATTGCTTCACTTCCAATTCACTCTTCCAAAACTCACTTCATCCCTCGCTTGATGCAAATCATGGTCCATTCTGGCTTCTTCTCTCAAATCAATCTCACCGAGAACGAGCTTGAAGTCAAGTATGCACTCACTGATGCCTCTTTGCTTCTGCTTAAGAGCCATCAAATGAGTGTGGCACCTTTCCTGATGGCCATGCTTGATCCAGTTTTAACAAATCCATGGCATCACTTTTCTAATTGGTTCAAAACTGGTAATACTACACCGTTTGAAATGGTGCATGGGAAATCGTTTTGGGAGTATGCTGGGAGTGATCCCAGAATTAATATCTTATTCAATGATGCGATGGCAAGTGATGCTCAACTAATCACTAGTTCGGTGATTGAGAAATGCAAAGGGGTGTTTATGGGATTGGAGTCATTGGTTGATGTTGGGGGAGGTACAGGAACCATGGGAAAGGCCATTGCCGAATCCTTCCCTCAGTTGGAATGCATTGTATTTGATCTTCCACATGTTGTATCTGGCTTGCAAGGAAGTGAAAACCTTAAATATGTTGGAGGGGACATGTTTGAGGCAATTCCTCCGGCCGATGCCATTTTGTTGAAGTGGATATTACATGACTGGAACGATGAGGAGTGTGTGAGCATATTGAAGAAATGCAAGGAAGCTATATCTAAGAAAGGCAAAGAAGGGAAAGTGATAATCATAGACATGGTGATGGATAATGAAGTGAAAGATAAAGAATATGTTGAAACACAGCTGTTCTTTGACATGTTGATGATGGTGTTGGTGAAGGGAAAAGAGAGAAACGAGAAGGAATGGGTGAAATTGTTTTCCTCTGCTGGTTTCAATAACTACAAAATAACTCCCGTTTTGGGCTCAAGGTCTCTCGTTCAGATCTATCCATAG 1062 0.4171 MESNDAKLLRAQTHIWNHIFNFINSMSLKCVVDLGIADIIHNHGQPISLSNLIASLPIHSSKTHFIPRLMQIMVHSGFFSQINLTENELEVKYALTDASLLLLKSHQMSVAPFLMAMLDPVLTNPWHHFSNWFKTGNTTPFEMVHGKSFWEYAGSDPRINILFNDAMASDAQLITSSVIEKCKGVFMGLESLVDVGGGTGTMGKAIAESFPQLECIVFDLPHVVSGLQGSENLKYVGGDMFEAIPPADAILLKWILHDWNDEECVSILKKCKEAISKKGKEGKVIIIDMVMDNEVKDKEYVETQLFFDMLMMVLVKGKERNEKEWVKLFSSAGFNNYKITPVLGSRSLVQIYP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01330 353 PANTHER O-METHYLTRANSFERASE 9 338 IPR016461 GO:0008168
Vimu1g01330 353 Pfam Dimerisation domain 26 74 IPR012967 GO:0046983
Vimu1g01330 353 CDD AdoMet_MTases 192 280 - -
Vimu1g01330 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 349 IPR029063 -
Vimu1g01330 353 FunFam O-methyltransferase ZRP4 104 353 - -
Vimu1g01330 353 Gene3D Vaccinia Virus protein VP39 103 353 IPR029063 -
Vimu1g01330 353 Gene3D - 1 102 IPR036388 -
Vimu1g01330 353 Pfam O-methyltransferase domain 126 335 IPR001077 GO:0008171
Vimu1g01330 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Vimu1g01330 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 16 353 IPR016461 GO:0008168
Vimu1g01330 353 FunFam Coniferyl alcohol 9-O-methyltransferase 1 102 - -
Vimu1g01330 353 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01330 Vimu-Chr1 10813537 10815456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01330 26 339 Monolignol Biosynthesis Gene Families AT5G54160 33.542 1.10e-56 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01330 - K16040 gmx:100807238 586.645