Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01324 ATGATGGGATCCCGTGATGAAGACGAGGCTGCGAAACTACTGAGGGCTCAAACACACGTATGGAATCATATTTTTAACTTCATAAATTCCATGTCCCTTAAGTGTGTTGTTGAGTTAGGCATAGCAGACATCATACACAACCATGGCCAACCCATCTCACTCTCAAACCTCATTGCTTCACTTCCAATTCACTCTTCCAAAACTCATTTCATCCCTCGCTTGATGCGAATCATGGTCCATTCTGGCTTCTTCTCTCAACTCAATCACAACGACAACGACCTTGAAGTCAAGTATGCACTCACTGATGCCTCTTTGCTGCTGCTTAAGAGCCATCAAATGAGTGTGGCGCCTTTGCTGCAGGCCGAGCTTGATCCAGTTTTAACAAATCCATGA 393 0.4478 MMGSRDEDEAAKLLRAQTHVWNHIFNFINSMSLKCVVELGIADIIHNHGQPISLSNLIASLPIHSSKTHFIPRLMRIMVHSGFFSQLNHNDNDLEVKYALTDASLLLLKSHQMSVAPLLQAELDPVLTNP 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01324 130 SUPERFAMILY "Winged helix" DNA-binding domain 12 111 IPR036390 -
Vimu1g01324 130 PANTHER O-METHYLTRANSFERASE 14 120 IPR016461 GO:0008168
Vimu1g01324 130 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Vimu1g01324 130 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 130 IPR016461 GO:0008168
Vimu1g01324 130 FunFam Coniferyl alcohol 9-O-methyltransferase 3 107 - -
Vimu1g01324 130 Gene3D - 2 107 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01324 Vimu-Chr1 10728646 10729038 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01324 31 116 Monolignol Biosynthesis Gene Families AT3G53140 35.106 4.10e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01324 - - gmx:100808134 201.06