Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01321 ATGCAAGAAATTATGGAATCTCATCACGCGAAACTACTGAGGGCTCAAACACACATATGGAATCATATTTTTAGTTTCATAAACTCCATGTCCCTTAAATGTGTTGTTGAGTTAGGCATAGCAGACATCATACACAACCATGGCCAACCCATCTCACTCTCAAACCTCATTGCTTCACTTCCAATTCACTCTTCCAAAACTCATTTCATCCCTCGCTTGATGCGAATCATGGTCCATTCTGGCTTCTTCTCTCAACTCAATCACAACGACAACGAGCTTCAAGTCAAGTATGCACTCACTGATGCCTCTTCGCTTCTTCTTAAGAGCCATGAAATGAGTATGGCACCTTTCCTGCTGGCCCAGCTTGATCCAGTTTTAACAAATCCATGGAATCAGTTTTCTAGTTGGTTTAAAAATGGTATTACTACACCCTTTGAAATGACGCATGGGAAATCGCTTTGGGAGTATGCTGGCAGTGATCCCAGAATTAACGTCTTATTCAATGATGCCATGGCAAGTGATGCTCAACTAATCTCTAGTTCGGTGATTGAGAAATGCAAAGGGGTGTTTATGGGATCGGAGACATTGGTTGATGTTGGGGGAGGTACAGGAACCATGGGAAAGGCCATTGCCGAATGCTTCCCTCAGTTGGAATGCATTGTATTTGATCTTCCACATGTTGTTTCTGGCTTGCAAGGAAGTGAAAACCTTAAATATGTTGGAGGGGACATGTTTGAGGCGATTCCTCCAACAGATGCCATTTTGTTGAAGTGCATATTACATGACTGGAACGATGAGGAGTGTGTGAGAATATTGAAGAAATGCAAGGAAGCTATATCTAAGAAAGGGAAAGAAGGAAAGGTGATAATCATAGACATGGTGATGGATAATGAAGTGAAAGATGAAGAATATGTTGAAACACAACTCTTCTGTGATATGTTAATGATGGTGTTGCTCAACGGAAAAGAGAGAAACGAAAAAGAGTGGGTTAAGCTGTTTTCCTCTGCTGGATTCAATAACTACGACATAACTCCCGTTTTGGGCTCAAGGTCTCTCATTCAGATCCATCCATAG 1074 0.4162 MQEIMESHHAKLLRAQTHIWNHIFSFINSMSLKCVVELGIADIIHNHGQPISLSNLIASLPIHSSKTHFIPRLMRIMVHSGFFSQLNHNDNELQVKYALTDASSLLLKSHEMSMAPFLLAQLDPVLTNPWNQFSSWFKNGITTPFEMTHGKSLWEYAGSDPRINVLFNDAMASDAQLISSSVIEKCKGVFMGSETLVDVGGGTGTMGKAIAECFPQLECIVFDLPHVVSGLQGSENLKYVGGDMFEAIPPTDAILLKCILHDWNDEECVRILKKCKEAISKKGKEGKVIIIDMVMDNEVKDEEYVETQLFCDMLMMVLLNGKERNEKEWVKLFSSAGFNNYDITPVLGSRSLIQIHP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01321 357 FunFam O-methyltransferase ZRP4 108 357 - -
Vimu1g01321 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vimu1g01321 357 SUPERFAMILY "Winged helix" DNA-binding domain 9 110 IPR036390 -
Vimu1g01321 357 Pfam O-methyltransferase domain 130 339 IPR001077 GO:0008171
Vimu1g01321 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Vimu1g01321 357 CDD AdoMet_MTases 195 284 - -
Vimu1g01321 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 353 IPR029063 -
Vimu1g01321 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Vimu1g01321 357 PANTHER O-METHYLTRANSFERASE 13 340 IPR016461 GO:0008168
Vimu1g01321 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Vimu1g01321 357 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Vimu1g01321 357 Gene3D - 2 106 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01321 Vimu-Chr1 10708867 10710911 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01321 30 343 Monolignol Biosynthesis Gene Families AT5G54160 33.125 1.14e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01321 - K16040 gmx:100807238 570.081