Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01316 ATGCCTTCAAGTGTCTTTCAATGGCTGAGTCTTGTGGGCATAATTTGGCTCCAATCTATAACAGGAACAAACACCAATTTTCCTGCTTACTCATCACAGCTGAAACAGCTTCTTTCCATCTCTCAGTTTCAGCTCAATAACCTTGCTTTTGCATCTGATGCTGGCAAACTATTTGGTTTTTTATCTGGCCTGGCTTCTATTTACTTACCTCTTTGGCTTGTTCTCATGATTGGTTCAACTCTTGGACTGGTTGGCTATGGTGTACAATATCTCTTCATCACAAACCATATCTCCTCTCTCTCCTATTGGCATGTCTTCTTTCTTACTGTTTTAGCAGGAAACAGCATTTGTTGGATTAATACTGTCTGCTATGTCATCACCATAAGGAACTTCCCATCTGATCGCCAAGTTGCTGTGGGGATAACAACTAGCTACCAAGGTTTAAGTGCTAAGGTTTATACCACCATTGTTAACGTTGTCGGACACAAAAAAAGAGCCATAACCTTTCTCTTTCTGAACTCAGTCTTGCCTTTGCTAGTTAGCCTAATAGCAACTCCCGTGGTTAGAGAAATTGAAGTCATAAGTCCTAAACACAGTAGGATTGGATTTGATGTTATCTTTGTCATAACAATTGTTACTGGAATTTATGCTGTCATGAGCAGTTTGGAGTTTGTCTCAAACAGAATATCTCCACTGGGTAGCCTTATTGGTATTTCAGTGTCCCTTCTCATACCTCTGTTAGTTCCACTTTCCATGATAATCGTGGGATCATGGCACAAAAATACAGAAAAACAAAAAGTGTATAATTTCACTGTGGAAGATGGTCATAATGAGAAAACGGAGAGTGAGGTGAAAGAAGATGAAGAAAGTGAAGAAGTTCATGATGTAGGTGTAAGAGAAGAAGTAGAAACAAAGTTAATGCTGAGAAGACTAGATTTCTGGTTATACTTCTTCGTGTATTTATTCGGTGCAACACTGGGTTTGGTGTTTCTGAATAACTTGGGACAAATAGCCGAATCCAGGGGTTACAATGGAACCTCATCGTTGGTGTCTTTGTCTTCTTCTTTTGGATTCTTTGGACGTCTTATGCCATCTATAATAGACTACTTTTACAGGGAAAATAAGTGTGGAATATCAAAACCAGGATATATGATGGTATTAATGGCTCCAACTGCTGGGGCATTTTTCTTACTGCTGAACAAGACTCACCTTGCCCTGTATGTTAGCACTGCCATAATTGGAGTGTGTACTGGTGCAATAACTTCAATTGCTGTGTCCATGACCACTGAATTATTTGGAACCAAGAATTTCTCAGTGAATCATAATGTGGTGGTAGCCAACATTCCTGTGGGGTCCCTTTTGTTTGGATACTTGGCTGCTATTGTTTATCATAAGGGAGGGAATGAAAATGGAAAATGCATGGGCATGGAATGCTACAGGAACACTTTCATCTTATGGGGTTCCCTTTCTTTCTTTGCCACTTTTTTGGCCTTCATTCTGCATGTTCGGACTCGCAAGTTTTACTCACATAAACTATAG 1539 0.3977 MPSSVFQWLSLVGIIWLQSITGTNTNFPAYSSQLKQLLSISQFQLNNLAFASDAGKLFGFLSGLASIYLPLWLVLMIGSTLGLVGYGVQYLFITNHISSLSYWHVFFLTVLAGNSICWINTVCYVITIRNFPSDRQVAVGITTSYQGLSAKVYTTIVNVVGHKKRAITFLFLNSVLPLLVSLIATPVVREIEVISPKHSRIGFDVIFVITIVTGIYAVMSSLEFVSNRISPLGSLIGISVSLLIPLLVPLSMIIVGSWHKNTEKQKVYNFTVEDGHNEKTESEVKEDEESEEVHDVGVREEVETKLMLRRLDFWLYFFVYLFGATLGLVFLNNLGQIAESRGYNGTSSLVSLSSSFGFFGRLMPSIIDYFYRENKCGISKPGYMMVLMAPTAGAFFLLLNKTHLALYVSTAIIGVCTGAITSIAVSMTTELFGTKNFSVNHNVVVANIPVGSLLFGYLAAIVYHKGGNENGKCMGMECYRNTFILWGSLSFFATFLAFILHVRTRKFYSHKL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01316 512 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 509 - -
Vimu1g01316 512 Pfam Nodulin-like 7 249 IPR010658 -
Vimu1g01316 512 SUPERFAMILY MFS general substrate transporter 11 507 IPR036259 -
Vimu1g01316 512 Gene3D MFS general substrate transporter like domains 7 503 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01316 Vimu-Chr1 10665094 10666799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01316 1 511 Nodulin-like Gene Family AT2G30300 48.752 1.33e-156 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01316 - - gmx:100808034 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01316 1 10665094 10666799 Vimu1g01316 1 10665094 10666799 ECH
Vimu2g02089 2 15601261 15603112 Vimu1g01316 1 10665094 10666799 PCT