Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01308 ATGCATGGATGTGACGCTTCTGTTCTGTTAGATGACACTTCAAGCTTTACTGGAGAAAAATCAGCTGGTGCAAATGTGAATTCTTTGAGAGGTTTTGAAGTAATTGATGACATCAAAACTAAAGTGGAGGCTGTATGTCCCGGAGTTGTTTCTTGTGCAGATATTGTAGCTGTTGCTGCTCGTGATTCTGTTGTTGCATTGGGAGGTCCATCTTGGAATGTTGGGTTAGGCAGAAGAGATTCAACCACGGCAAGTAAAGATGCTGCCACTAAGGATATTCCATCCCCACTTATGGATCTTAGTGCCCTTATATCTGCTTTTGCAAACAAGGGATTTAACACCAAGGAAATGGTAGCACTGTCAGGAGCTCATACAACAGGGCTAGCCAGGTGTCAGCTATTTAGAGGCAGGGTTTATAATGAAACAAGCATTGAGTCAAACTTTGCAACATCACTCAAGTCAAACTGTCCAAGCACTGGTGGAGACACCAACCTTTCCCCACTTGATGTCACCACAAGTGTTATATTTGACAATGCTTATTTCAAGAATCTCATCAACCAAAAGGGGCTTCTGCATTCTGATCAACAGTTGTTTAGTGGTGGTTCTGCAGATTCTCAGGTCACTACCTATAGCAATGACCCTTCAGCTTTCTATGCAGACTTTGCTAGTGCCATGGTCAAAATGGGAAACCTTAGCCCCTTAACAGGGAAAAGTGGCCAAATTCGTACTAATTGCCACAAGGTTAATTAA 750 0.4267 MHGCDASVLLDDTSSFTGEKSAGANVNSLRGFEVIDDIKTKVEAVCPGVVSCADIVAVAARDSVVALGGPSWNVGLGRRDSTTASKDAATKDIPSPLMDLSALISAFANKGFNTKEMVALSGAHTTGLARCQLFRGRVYNETSIESNFATSLKSNCPSTGGDTNLSPLDVTTSVIFDNAYFKNLINQKGLLHSDQQLFSGGSADSQVTTYSNDPSAFYADFASAMVKMGNLSPLTGKSGQIRTNCHKVN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01308 249 Pfam Peroxidase 2 213 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 Gene3D - 2 245 - -
Vimu1g01308 249 PRINTS Plant peroxidase signature 30 43 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Plant peroxidase signature 183 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Plant peroxidase signature 167 182 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Plant peroxidase signature 223 236 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Plant peroxidase signature 115 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Plant peroxidase signature 49 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Plant peroxidase signature 68 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 CDD secretory_peroxidase 2 248 IPR033905 GO:0004601|GO:0042744
Vimu1g01308 249 FunFam Peroxidase 94 228 - -
Vimu1g01308 249 ProSiteProfiles Plant heme peroxidase family profile. 1 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 SUPERFAMILY Heme-dependent peroxidases 2 249 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Haem peroxidase superfamily signature 50 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Haem peroxidase superfamily signature 68 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Haem peroxidase superfamily signature 116 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 PRINTS Haem peroxidase superfamily signature 169 184 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01308 249 Gene3D Peroxidase, domain 2 94 228 - -
Vimu1g01308 249 PANTHER PEROXIDASE 72-RELATED 2 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01308 Vimu-Chr1 10536843 10538728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01308 1 249 Peroxidase AT5G05340 63.347 1.63e-115 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01308 K00430 - gmx:100777191 461.455