Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01307 ATGAATTTTGATCTTCAATCTCTTGTTGTGATCGTTATAGCCACTTTGGCGTCAACATTTATGATCCCTACCTTTGCTGAGCTAAGTCCTCATTATTATGACCAAGTTTGTCCTGAGGCATTGCCAATCATATACTCACTTGTTAAGAAGGCAATTCTTCATCAAAAACGCATCGGAGCATCCTTCCTGCGTTTGCATTTCCATGACTGCTTTGTTAATGGCTGTGATGGATCAGTGCTGCTAGATGACACACCTTTCTTCTTAGGGGAGAAGACTGCATTTGCAAATCTGAATTCAATCAGAGGATTCGAGGTGGTTGATCAAATCAAAGCAGCAGTTGATAAGGCTTGCAAACGTCCTGTAGTATCATGCGCAGATATCTTGGCTGTAGCTGCTCGTGACTCTGTAGCCATATTGGGTGGTCCACAATATTGGTACCAAGTGTTACTGGGCAGAAGAGATGCAAGAAATGCAAGCAGGGATGCTGCAAATGCCAATCTTCCAGCTCCATTTTTCAACTTTCATCAGCTTCTTGCCAATTTCCAAACTCATGGACTAAACCTCAAGGATTTGGTGGTCCTCTCCGGTGGCCATACCATTGGATTAGCAAGGTGCATTAACTTCAGGGACAGGATCTTCAATGACACCAACATAGACCCCAAATTTGCAGCAACTTTGCGTGAGTCATGCCCTCGAACAGGAGGAGACAATAGCTTAGCACCACTTGATGCCACTCCTTCAAAATTTGACACCACATACTATAAAGCTTTGTTGTACAAAAAGGGTCTCCTCCATTCTGATCAAGAGCTGTTCAAGGGTGATGGTTCTGAAAGTAACAGTTTGGTGAAACTATACAGCAATAACCCTTATGCTTTTGCCAAAGATTTTGGAGTTTCCATGATTAAGATGGGTAACTTGAAGCCTCTTACAGGGTCCAAAGGAGAGATCAGATACAATTGCAGAAAAGTCAATTAG 975 0.4267 MNFDLQSLVVIVIATLASTFMIPTFAELSPHYYDQVCPEALPIIYSLVKKAILHQKRIGASFLRLHFHDCFVNGCDGSVLLDDTPFFLGEKTAFANLNSIRGFEVVDQIKAAVDKACKRPVVSCADILAVAARDSVAILGGPQYWYQVLLGRRDARNASRDAANANLPAPFFNFHQLLANFQTHGLNLKDLVVLSGGHTIGLARCINFRDRIFNDTNIDPKFAATLRESCPRTGGDNSLAPLDATPSKFDTTYYKALLYKKGLLHSDQELFKGDGSESNSLVKLYSNNPYAFAKDFGVSMIKMGNLKPLTGSKGEIRYNCRKVN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01307 324 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 SUPERFAMILY Heme-dependent peroxidases 27 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Vimu1g01307 324 CDD secretory_peroxidase 27 323 IPR033905 GO:0004601|GO:0042744
Vimu1g01307 324 Gene3D - 32 324 - -
Vimu1g01307 324 PANTHER PEROXIDASE 72-RELATED 26 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 FunFam Peroxidase 31 173 - -
Vimu1g01307 324 FunFam Peroxidase 168 303 - -
Vimu1g01307 324 Pfam Peroxidase 46 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Vimu1g01307 324 ProSiteProfiles Plant heme peroxidase family profile. 27 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01307 324 Gene3D Peroxidase, domain 2 168 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01307 Vimu-Chr1 10533128 10535398 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01307 26 324 Peroxidase AT5G05340 55.298 7.19e-118 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01307 K00430 - gmx:100810852 500.745