LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01305	ATGTGGTTAGCATGCTCCTTCCGTCTATATAAGTCATTTTGTTATGGTAGGAAAGGTATGATTGAGAGGTTGAAGATGGGTTATTCTGATGATGGTATTCAATCATTGGTTGTGTTTGTGGTTATTGGCATGGTGACATTAATGATCCCTGTCAATGCAAACCTCTCTCCTCATTTCTATGATAAACTTTGCCCTCAGGCGTTACCTGTCATAAGCTCAGTCGTTCAAAGAGCTATTAGCAGAGAACCACGCATTGGAGCTTCTCTTCTGCGCTTGCATTTCCATGATTGCTTCGTCAATGGCTGTGATGGATCAATTCTGCTAGACGACACCAGAAACTTCATTGGTGAGAAGACAGCTTTTCCAAACAATAATTCAGCAAGAGGGTTTTCTGTGGTTGATGAAATCAAAGCAGCAGTTGATAAGGCCTGCAAACGCCCTGTGGTGTCATGTGCAGATATTTTAGCCATAGCAGCTCGTGATTCCGTTGCCATTTATGGGGGGAAACACTTTTGGTACCAAGTGTTGTTGGGTAGAAGAGATGCAAGAACTGCAAGCAGGGATGCTGCAAATTCCAATCTTCCTCCACCAACCTTCAGCTTCTCTCAGCTTGTTTCCAACTTCCAATCTCACGGATTGAATGTGAGGGACCTTGTGGCTCTCTCTGGAGGCCACACCATTGGCTTTGCAAAGTGCACTACCTTCAGAAACAGAATCTACAATGAATCCAACATTGATCCCAAGTTTGCAGCCTCTTTGAGGAACATATGTCCTCGAAGTGGTGGAGACAATAACTTAGAAAAATTAGATGCTACTCCTGCAAGAGCTGACAGCAGATACTTCACAGATTTGCTGCAGAAAAAGGGTCTCCTCCATTCTGATCAAGAACTGTTCAAGGGACAAGGTAGAGAAAGTGACAAGCTGGTGCAGCTATACAGTAGAAGCCCTATAGCTTTTGCTAGAGATTTCAAAGCTTCAATGATAAAAATGGGTAACTTGAAGCCTCTTACTGGGAGTAAGGGAGAAATCAGATGTCACTGCAGAAGGGTCAATTAG	1056	0.4347	MWLACSFRLYKSFCYGRKGMIERLKMGYSDDGIQSLVVFVVIGMVTLMIPVNANLSPHFYDKLCPQALPVISSVVQRAISREPRIGASLLRLHFHDCFVNGCDGSILLDDTRNFIGEKTAFPNNNSARGFSVVDEIKAAVDKACKRPVVSCADILAIAARDSVAIYGGKHFWYQVLLGRRDARTASRDAANSNLPPPTFSFSQLVSNFQSHGLNVRDLVALSGGHTIGFAKCTTFRNRIYNESNIDPKFAASLRNICPRSGGDNNLEKLDATPARADSRYFTDLLQKKGLLHSDQELFKGQGRESDKLVQLYSRSPIAFARDFKASMIKMGNLKPLTGSKGEIRCHCRRVN	351

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g01305	351	PANTHER	PEROXIDASE 72-RELATED	51	350	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vimu1g01305	351	PRINTS	Haem peroxidase superfamily signature	149	166	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vimu1g01305	351	PRINTS	Haem peroxidase superfamily signature	217	232	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vimu1g01305	351	PRINTS	Haem peroxidase superfamily signature	269	284	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vimu1g01305	351	PRINTS	Haem peroxidase superfamily signature	169	181	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vimu1g01305	351	PRINTS	Haem peroxidase superfamily signature	86	100	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vimu1g01305	351	CDD	secretory_peroxidase	54	350	IPR033905	GO:0004601\|GO:0042744
	Vimu1g01305	351	ProSitePatterns	Peroxidases proximal heme-ligand signature.	217	227	IPR019793	-
	Vimu1g01305	351	Gene3D	Peroxidase, domain 2	195	330	-	-
	Vimu1g01305	351	FunFam	Peroxidase	195	330	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01305	Vimu-Chr1	10510680	10514329	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01305	51	351	Peroxidase	AT5G05340	57.895	5.33e-120	347

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01305	K00430		-	gmx:100811396	543.502

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