Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01305 ATGTGGTTAGCATGCTCCTTCCGTCTATATAAGTCATTTTGTTATGGTAGGAAAGGTATGATTGAGAGGTTGAAGATGGGTTATTCTGATGATGGTATTCAATCATTGGTTGTGTTTGTGGTTATTGGCATGGTGACATTAATGATCCCTGTCAATGCAAACCTCTCTCCTCATTTCTATGATAAACTTTGCCCTCAGGCGTTACCTGTCATAAGCTCAGTCGTTCAAAGAGCTATTAGCAGAGAACCACGCATTGGAGCTTCTCTTCTGCGCTTGCATTTCCATGATTGCTTCGTCAATGGCTGTGATGGATCAATTCTGCTAGACGACACCAGAAACTTCATTGGTGAGAAGACAGCTTTTCCAAACAATAATTCAGCAAGAGGGTTTTCTGTGGTTGATGAAATCAAAGCAGCAGTTGATAAGGCCTGCAAACGCCCTGTGGTGTCATGTGCAGATATTTTAGCCATAGCAGCTCGTGATTCCGTTGCCATTTATGGGGGGAAACACTTTTGGTACCAAGTGTTGTTGGGTAGAAGAGATGCAAGAACTGCAAGCAGGGATGCTGCAAATTCCAATCTTCCTCCACCAACCTTCAGCTTCTCTCAGCTTGTTTCCAACTTCCAATCTCACGGATTGAATGTGAGGGACCTTGTGGCTCTCTCTGGAGGCCACACCATTGGCTTTGCAAAGTGCACTACCTTCAGAAACAGAATCTACAATGAATCCAACATTGATCCCAAGTTTGCAGCCTCTTTGAGGAACATATGTCCTCGAAGTGGTGGAGACAATAACTTAGAAAAATTAGATGCTACTCCTGCAAGAGCTGACAGCAGATACTTCACAGATTTGCTGCAGAAAAAGGGTCTCCTCCATTCTGATCAAGAACTGTTCAAGGGACAAGGTAGAGAAAGTGACAAGCTGGTGCAGCTATACAGTAGAAGCCCTATAGCTTTTGCTAGAGATTTCAAAGCTTCAATGATAAAAATGGGTAACTTGAAGCCTCTTACTGGGAGTAAGGGAGAAATCAGATGTCACTGCAGAAGGGTCAATTAG 1056 0.4347 MWLACSFRLYKSFCYGRKGMIERLKMGYSDDGIQSLVVFVVIGMVTLMIPVNANLSPHFYDKLCPQALPVISSVVQRAISREPRIGASLLRLHFHDCFVNGCDGSILLDDTRNFIGEKTAFPNNNSARGFSVVDEIKAAVDKACKRPVVSCADILAIAARDSVAIYGGKHFWYQVLLGRRDARTASRDAANSNLPPPTFSFSQLVSNFQSHGLNVRDLVALSGGHTIGFAKCTTFRNRIYNESNIDPKFAASLRNICPRSGGDNNLEKLDATPARADSRYFTDLLQKKGLLHSDQELFKGQGRESDKLVQLYSRSPIAFARDFKASMIKMGNLKPLTGSKGEIRCHCRRVN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01305 351 PANTHER PEROXIDASE 72-RELATED 51 350 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Haem peroxidase superfamily signature 149 166 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Haem peroxidase superfamily signature 217 232 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Haem peroxidase superfamily signature 269 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Haem peroxidase superfamily signature 169 181 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Haem peroxidase superfamily signature 86 100 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 CDD secretory_peroxidase 54 350 IPR033905 GO:0004601|GO:0042744
Vimu1g01305 351 ProSitePatterns Peroxidases proximal heme-ligand signature. 217 227 IPR019793 -
Vimu1g01305 351 Gene3D Peroxidase, domain 2 195 330 - -
Vimu1g01305 351 FunFam Peroxidase 195 330 - -
Vimu1g01305 351 FunFam Peroxidase 58 205 - -
Vimu1g01305 351 SUPERFAMILY Heme-dependent peroxidases 54 351 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 ProSitePatterns Peroxidases active site signature. 86 97 IPR019794 GO:0004601
Vimu1g01305 351 Pfam Peroxidase 73 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Plant peroxidase signature 88 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Plant peroxidase signature 267 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Plant peroxidase signature 148 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Plant peroxidase signature 216 228 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Plant peroxidase signature 283 300 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Plant peroxidase signature 128 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Plant peroxidase signature 325 338 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 PRINTS Plant peroxidase signature 64 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01305 351 Gene3D - 58 348 - -
Vimu1g01305 351 ProSiteProfiles Plant heme peroxidase family profile. 54 351 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01305 Vimu-Chr1 10510680 10514329 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01305 51 351 Peroxidase AT5G05340 57.895 5.33e-120 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01305 K00430 - gmx:100811396 543.502