Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01300 ATGGCACTTTCTTCTTCTTCTTCTTCTTCTTCTTCAACAACCACTTTTGCTATAGCTTTGTTCACGCTTTTCCTTATAGGAAGTTCTTCAGCTCAACTCTCTGAGAACTTCTACGCAAAAAAATGTCCCAAGCTTTTATCTGCTGTAAAATCTGTGGTTCAATCTGCTGTGGCTAAAGAACCTCGCATGGGAGCTTCTCTCCTTCGCCTCTTCTTTCATGACTGCTTTGTCAATGGTTGTGATGCATCAGTACTACTTGATGGCCCTTCGTCAGAGAAGACTGCACCACCCAATGCTAATTCTTTGAGAGGCTATGAAGTCATTGATGCCATTAAGTCTAAGGTGGAGGCAATTTGCCCAGGAATAGTCTCATGTGCTGATATAACAGCCATTGCTGCTCGTGATTCTGTCACTATTGTTAAACTTGGTAGAAGGGATTCCAAGACTGGATTCCTCCAACTTGCAAGCAGTGGTGTTCTCCCGTCTCCATCTTCTTCCCTCAGCACCCTTATCTCAAACTTCAAAGATCAAGGCCTCTCTGCCAAGGACATGGTAGCCTTATCTGGAGCACACACAATTGGGAAGGCAAGGTGTGCAGTTTATGGAAGTCGCATATACAATGAAAAAAACATTGACAGTTTGTTTGCGAAGGGAAGGCAAAAGAACTGTCCAAGAGACAGCAGTGGGACAGCAAAGGACAACAATGTTGCACCACTAGATTTCAAAACTCCTGACCATTTTGACAACAGCTACTACAAGAATCTCATCAACAAAAAGGGCCTTCTTCATTCTGATCAAGTTCTCTTCAATGGAGGATCCACAGATTCACTTGTTAGATATTACAGCAACAATCAGAGGGCATTTGAGTCTGATTTTGTCACTGCAATGATCAAGATGGGAAACATCAAACCTTTAACCGGCTCAAATGGGGAGATAAGGAGGCATTGCAGTAGACCTAATTAG 963 0.4299 MALSSSSSSSSSTTTFAIALFTLFLIGSSSAQLSENFYAKKCPKLLSAVKSVVQSAVAKEPRMGASLLRLFFHDCFVNGCDASVLLDGPSSEKTAPPNANSLRGYEVIDAIKSKVEAICPGIVSCADITAIAARDSVTIVKLGRRDSKTGFLQLASSGVLPSPSSSLSTLISNFKDQGLSAKDMVALSGAHTIGKARCAVYGSRIYNEKNIDSLFAKGRQKNCPRDSSGTAKDNNVAPLDFKTPDHFDNSYYKNLINKKGLLHSDQVLFNGGSTDSLVRYYSNNQRAFESDFVTAMIKMGNIKPLTGSNGEIRRHCSRPN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01300 320 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 Gene3D Peroxidase, domain 2 161 299 - -
Vimu1g01300 320 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Vimu1g01300 320 PANTHER PEROXIDASE 72-RELATED 29 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 FunFam Peroxidase 161 299 - -
Vimu1g01300 320 Pfam Peroxidase 49 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Vimu1g01300 320 Gene3D - 36 317 - -
Vimu1g01300 320 ProSiteProfiles Plant heme peroxidase family profile. 32 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu1g01300 320 CDD secretory_peroxidase 32 318 IPR033905 GO:0004601|GO:0042744
Vimu1g01300 320 SUPERFAMILY Heme-dependent peroxidases 32 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01300 Vimu-Chr1 10460538 10463378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01300 10 320 Peroxidase AT5G58400 60.436 6.96e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01300 K00430 - gmx:100812478 488.804