Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01299 ATGGAGATATCTTTATTGAAGGTCCTATCTGATGCAATATCCTCATTTTTGGATTTATCATTTTCTGAAAACACGAAGTTAGAACCTGTATCAAAATGTTACCAAAAGGCAGAGAAGATGCTTAAGCTGTTGAAGCCTATTGTTGATACTAATGTTTTTTCAGATATAGCTTCTCATGAAGTACATAGGAAACTCTTTGAGGAACTTAGTGTGGCAGTTGATGAGTTGAGGGAGCTTATTCTGAACTGGCATCCGTTATCTAGCAAAATTTACTTTATGTTCACCCAAGTTCTAGTTTTTATTGAGTCTAACTACATATCATTACCCTTGTACGCCTTGGTGAGACGAGATGTGCTGAGGTTAGAAGTATATCTGTTTAACATAGGATTCCATCTGGTTAATCAAGTTGATCCCATAATATCAACAGTTCAGGCATTGGGTCTAAGCATTTTACAACAGCTGGAGGTTTCACATCAAGTTCTCCCTGATAATTTGGGAAATAAAACATCATCAGCCATTAAAAAAGCTATTATGGAACAACAGGAAGGTGTAATACCAAGTTTGGAGGTCCTGGAAAACATTGCTGACAACCTGGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGCTGTAGCCCTTGACAAGCTGAAGGAGAAGGCTGAACAAATTGAAAACACTTCAGAAGTTGAATATGTTGATAAAATGATCTCAATTGTAAATCAAATGCATGAGCATATTGTTATGCTTAAGCAAGCTCAGAGTTCTATCCCAGTGTCAGTACCTGCTGATTTTTGCTGTCCCCTGTCTTTGGAATTGATGACAGATCCGGTCATTGTGGCATCTGGACAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGACCTAGGTCTTACTGTTTGTCCAAAGACACGCCAGACTCTTGTCCACACCAATCTAATACCTAACTACACTGTAAAAGCATTAATTGCTAACTGGTGTGAAACACATGATGTAAAGCTTCCTGATCCCATTAAGTCCAAAAGCTTAAATCAACCATCTCCCTTTCATGTGTCTATGGAGTCTGGTTTGACCAAGGATTTTCCTGGTATAACTAGTAGTGAACCCCACCAAGAACGAACATCAACATTTCATCCCTCTTCTATTCCAGGTGGTTCTTTGAATGGCACGGTTCATGAGCCATACGTGGATCTTGAAAGAATATCACACACAGGTTCAGATGATGGATCTGCCAGCTCAAATGAAGGGAGTGTCGATTCATTTGGTGAATCATTAACATCACCATCCAGAAATGCCTTGAGATCAGAACAATCTCACAATGATGTTAGAACTACTTCTGATGTCAACAATACTCTGCTGTCAACCAGTTCAGTCCACAATCACGATGCTTCTTCTGGGGAATTGAATTCAGGACAAGATGCTGTTCGCTTGCCAACTCAGCATAGAGAATCTGAGTTTTCTTCCCAATTAGCAGTGCCAAGGTCTCATAGCCAAACTATATGGCAACAATCATCCGAGTGGCTTGTTCCTAGGGTAGTGTCTACTATTGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCAGGTTTTGAAATTAGTGGAGCAGTTAAAGATTGATTCCCTTGATGCTAAGAGAGAGGCAACATCAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGATTTACTGCAATCAACCGATTCTATGATCCAGGAAAATTCTGTTACAGCTCTCCTTAACTTATCAATCAATGATAACAACAAGGCTGCTATTGCAAATGCTGGTGCAATTGAACCTTTGATTCATGTCCTCAAGACAGGGAGTGCAGAAGCCAAGGAAAATTCAGCTGCCACTCTTTTCAGCCTCTCAGTAACTGAGGAAAACAAAATCAGGATAGGGAGGTCTGGGGCAATTGGACCACTGGTTGATTTGTTGGGAAACGGAACCCCAAGGGGGAAGAAAGATGCTGCCACGGCCTTGTTTAATTTGTCCATATTTCACGAAAACAAGGACCGGATTGTGCAAGCAGGTGCTGTAAAACACCTTGTAGAGTTAATGGACCCAGCAGCTGGAATGGTGGACAAGGCTGTGGCTGTTTTAGCAAATCTTGCTACAATACCAGAAGGGAAAGCAGCCATTGGTGATCAAGGTGGGATTCCTGTTTTGGTTGAGGTTATTGAGTTGGGCTCTGTGAGAGGAAAGGAGAATGCTGCATCGGCTCTTCTACATCTATGCTCAGACAACCACAGATATTTAAACAGTGTGCTCCAAGAAGGAGCTGTTCCACCTTTAGTAGCATTGCTCTTGCGCTCCTTAATCAATTTAGAAGCCAAAGACATGGTGGTGGTGGGAGAGGTTGATCTCAATTTTGCAGCCAGTTGGGGCATCCAATGTTTTTGA 2445 0.4143 MEISLLKVLSDAISSFLDLSFSENTKLEPVSKCYQKAEKMLKLLKPIVDTNVFSDIASHEVHRKLFEELSVAVDELRELILNWHPLSSKIYFMFTQVLVFIESNYISLPLYALVRRDVLRLEVYLFNIGFHLVNQVDPIISTVQALGLSILQQLEVSHQVLPDNLGNKTSSAIKKAIMEQQEGVIPSLEVLENIADNLGLRSNQEVLIEAVALDKLKEKAEQIENTSEVEYVDKMISIVNQMHEHIVMLKQAQSSIPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETHDVKLPDPIKSKSLNQPSPFHVSMESGLTKDFPGITSSEPHQERTSTFHPSSIPGGSLNGTVHEPYVDLERISHTGSDDGSASSNEGSVDSFGESLTSPSRNALRSEQSHNDVRTTSDVNNTLLSTSSVHNHDASSGELNSGQDAVRLPTQHRESEFSSQLAVPRSHSQTIWQQSSEWLVPRVVSTIETRADLSAAETQVLKLVEQLKIDSLDAKREATSELRLLAKHNMDNRIVISNCGAISLLVDLLQSTDSMIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSAEAKENSAATLFSLSVTEENKIRIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGKAAIGDQGGIPVLVEVIELGSVRGKENAASALLHLCSDNHRYLNSVLQEGAVPPLVALLLRSLINLEAKDMVVVGEVDLNFAASWGIQCF 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01299 814 Gene3D - 505 798 IPR011989 -
Vimu1g01299 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 336 IPR013083 -
Vimu1g01299 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 610 652 IPR000225 GO:0005515
Vimu1g01299 814 MobiDBLite consensus disorder prediction 405 435 - -
Vimu1g01299 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 692 733 IPR000225 GO:0005515
Vimu1g01299 814 MobiDBLite consensus disorder prediction 359 387 - -
Vimu1g01299 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 569 611 IPR000225 GO:0005515
Vimu1g01299 814 PANTHER U BOX DOMAIN-CONTAINING 29 783 - -
Vimu1g01299 814 MobiDBLite consensus disorder prediction 343 445 - -
Vimu1g01299 814 SUPERFAMILY RING/U-box 248 337 - -
Vimu1g01299 814 Pfam Armadillo/beta-catenin-like repeat 560 597 IPR000225 GO:0005515
Vimu1g01299 814 Pfam Armadillo/beta-catenin-like repeat 641 679 IPR000225 GO:0005515
Vimu1g01299 814 Pfam Armadillo/beta-catenin-like repeat 722 761 IPR000225 GO:0005515
Vimu1g01299 814 Pfam Armadillo/beta-catenin-like repeat 683 719 IPR000225 GO:0005515
Vimu1g01299 814 Pfam Armadillo/beta-catenin-like repeat 599 638 IPR000225 GO:0005515
Vimu1g01299 814 SUPERFAMILY ARM repeat 529 784 IPR016024 -
Vimu1g01299 814 FunFam RING-type E3 ubiquitin transferase 513 786 - -
Vimu1g01299 814 SMART arm_5 681 720 IPR000225 GO:0005515
Vimu1g01299 814 SMART arm_5 640 680 IPR000225 GO:0005515
Vimu1g01299 814 SMART arm_5 599 639 IPR000225 GO:0005515
Vimu1g01299 814 SMART arm_5 721 761 IPR000225 GO:0005515
Vimu1g01299 814 SMART arm_5 558 598 IPR000225 GO:0005515
Vimu1g01299 814 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Vimu1g01299 814 FunFam RING-type E3 ubiquitin transferase 259 334 - -
Vimu1g01299 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 651 693 IPR000225 GO:0005515
Vimu1g01299 814 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Vimu1g01299 814 Pfam U-box domain 260 330 IPR003613 GO:0004842|GO:0016567
Vimu1g01299 814 CDD RING-Ubox_PUB 261 313 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01299 Vimu-Chr1 10454706 10457846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01299 220 782 U-box Gene Family AT2G23140 59.770 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01299 - - gmx:100777715 1134.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02072 2 15423237 15429209 Vimu1g01299 1 10454706 10457846 PCT