Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01295 ATGCAGTTTTTGTATTTTCCCAAAGATAGATTAGAGGAGATAACAAAGGTGAGAGCAGAGGTGGAGGCATCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAATCTTTACAAGCAGAACTAAATGCAATAAGGGCAGAGATACTAAAATACAAGTATAGAGAGGCTGCAAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACAAGGTCTTTCTCAACCTCTTACTCCTCCTCCACCAAAACCATTGCATACTCCTCCACTAAAACCATTGCCTTCTCCTTCTGTTATCCTTTCATCATTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG 741 0.4278 MQFLYFPKDRLEEITKVRAEVEASSQMGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPQGLSQPLTPPPPKPLHTPPLKPLPSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01295 246 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 189 - -
Vimu1g01295 246 MobiDBLite consensus disorder prediction 178 246 - -
Vimu1g01295 246 MobiDBLite consensus disorder prediction 186 207 - -
Vimu1g01295 246 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Vimu1g01295 246 MobiDBLite consensus disorder prediction 209 246 - -
Vimu1g01295 246 Pfam Lateral organ boundaries (LOB) domain 46 142 IPR004883 -
Vimu1g01295 246 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01295 Vimu-Chr1 10418912 10419746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01295 27 159 AS2 family AT2G30340 79.104 9.27e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g01295 LOB 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01295 - - gmx:100813489 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01295 1 10418912 10419746 Vimu1g01295 1 10418912 10419746 ECH