LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g01293	ATGTCTCCTAGGGAGAACAAATCAAACATCTTGATGCAAAAATATGAACTAGGAAGGTTACTGGGTAAAGGAACTTTTGGAAAGGTTTACTATGGCCGTAATACAATAGCTAACCAAAGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAAAGCTGGGCAGGTTGATCACGTTAAAAGGGAAATATCTATCATGAGACTGGTGAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACTAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGGGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTCGGCAGCTAGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTATGCCATAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATTTGAAGATCTCAGATTTTGGGTTAAGTGCCCTGGCTGAATCCAAACATCAAGATGGTTTGTTGCACACAGCTTGTGGAACACCTGCTTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTATGATGGTGCAAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACATTCCTTTTCAAGATCCTAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGTCCTAGATGGTTCCCAAGAGGAGTTCGGAGGCTATTGAGAAAGATGTTGGATCCAAATCCAAACACTAGGATTTCCATAGATGAGATTAAGCAATGTTCTTGGTTTAGGAAGTGGCCAAATGGTATACAGAAAACACAAGAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACAAATCATTCTAAACAATATGGTGATGAAAGTAATGGCCTAGCAGCAGAAGCAAGGCAAGAGTCAGTTGTGCCAGTAAGTATAAATGCCTTTGATATAATCTCCCTCTCACCTGGGTTTAATCTTTGTGGATTCTTTGAAGACAGCTTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTCTCATCATCTTCAGGCTGGAAGAAATTGCAAATCGGCTGAAGATGAAAATAAAGAAAAGGGCTGCCGGTTTGTTGAAATTAGAGAGCCTTCATGAAGGTAGGAAGGGGATCTTATCCATTGATGCAGAAATATTTGAGGTAACTCCACTTCTGCACTTGGTGGAGGTGAAGAAATCAAATGGAGATACGCTGGAATATGAGAAAATACTGAAAGAAGCCATAAGGCCTGCTCTTAAAGATATTGTTTGGGTATGGCAAGGTGACCAACAACAATAA	1341	0.396	MSPRENKSNILMQKYELGRLLGKGTFGKVYYGRNTIANQSVAIKVIDKNKVIKAGQVDHVKREISIMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFRQLVNAVDFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYIPFQDPNLMVMYRKISKAEFTCPRWFPRGVRRLLRKMLDPNPNTRISIDEIKQCSWFRKWPNGIQKTQEGENRSVSPSITNHSKQYGDESNGLAAEARQESVVPVSINAFDIISLSPGFNLCGFFEDSFQKREARFTSRQPASLIIFRLEEIANRLKMKIKKRAAGLLKLESLHEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEAIRPALKDIVWVWQGDQQQ	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g01293	446	ProSiteProfiles	NAF domain profile.	314	338	IPR018451	GO:0007165
	Vimu1g01293	446	FunFam	Non-specific serine/threonine protein kinase	5	295	-	-
	Vimu1g01293	446	SMART	serkin_6	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01293	446	CDD	STKc_SnRK3	14	268	-	-
	Vimu1g01293	446	Gene3D	Kinase associated domain 1, KA1	319	439	-	-
	Vimu1g01293	446	Pfam	NAF domain	316	374	IPR004041	GO:0007165
	Vimu1g01293	446	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Vimu1g01293	446	Pfam	Protein kinase domain	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01293	446	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	434	-	-
	Vimu1g01293	446	MobiDBLite	consensus disorder prediction	279	300	-	-
	Vimu1g01293	446	SUPERFAMILY	Protein kinase-like (PK-like)	11	297	IPR011009	-
	Vimu1g01293	446	FunFam	Non-specific serine/threonine protein kinase	314	438	-	-
	Vimu1g01293	446	MobiDBLite	consensus disorder prediction	279	303	-	-
	Vimu1g01293	446	CDD	CIPK_C	320	434	-	-
	Vimu1g01293	446	FunFam	Non-specific serine/threonine protein kinase	6	94	-	-
	Vimu1g01293	446	ProSiteProfiles	Protein kinase domain profile.	15	269	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g01293	446	Gene3D	Transferase(Phosphotransferase) domain 1	5	318	-	-
	Vimu1g01293	446	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g01293	Vimu-Chr1	10384984	10386324	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g01293	5	446	CBL-interacting serine-threonine protein kinases	AT5G58380	64.680	0.0	606

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vimu1g01293		Pkinase	3.4e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g01293	-		K07198	gmx:100779316	791.571