Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01291 ATGCCGGAAATTGAGCAGGCGGCGCCGCAGAGCACCGTCTTGTTCGAAAAATACGAGGTCGGAAGGCTCCTAGGATGCGGCGCGTTCGCGAAGGTGTACCACGCGCGTAACACCAGCACGGGGCAAAGCGTGGCAGTGAAAGTGGTAAGCAAGAAGAAACTAGCCGCAACGGGTATGGCCTCCAACGTGAAGCGCGAGATTGCCATCATGAGCCGTCTTCACCACCCCAACATCGTGAAACTCCACGAAGTGTTGGCGACCAAGACGAAAATCTACTTCATCTTGGAATTCGCCAAAGGAGGCGAGCTCTTCGCGAGAATCGCGAAAAGTCGATTCGGCGAAGATCTCGCGCGACGGTTTTTCCAGCAGTTGATCTCCGCCGTCGGGTACTGCCATGCGCGGGGCGTTTTCCACCGCGACTTGAAGCCGGAGAATCTACTGCTGGACGAGCAGGCAAACCTCAAAGTCTCCGACTTTGGACTCGGCGCGGTGAAGGAGCAGATGGGGGTGGATGGGGTGCTGCACACGCTATGTGGGACCCCTGCTTACGTGGCACCGGAGATTTTGGCGAAGAAGGGTTACGACGGGGCTAAAGTTGATGTTTGGTCTTGTGGGGTTATTCTCTTTGTTCTTGTGGCTGGGTATCTACCGTTCAATGACCCGAATCTTATGGTGATGTACAGGAAGATTTACAAGGGGGAGTATCGATGTCCGAGGTGGTTTTCGACGGAGTTAAGGAGGTTTCTGGCGAGGTTGTTGGATACGAATCCCGAGACGAGGATAACCGTCGATGAGATTTTGAAGGAGGAGTGGTTCAAAAGGGGGTACAAGGAGGTTACATTTGGCGATTTGGGTTTGGAGTGGAAGAGTGAAGGTGATGATGTGAAGGATTTGAACGCGTTTGATATAATTTCTTTCTCCACAGGCTTGAATCTCTCCGGTTTGTTTGATTCGTTGAAGGAGGTGGAAGAGGGAGAGAGGTTTCTGCTTAAGGAGTCGCCGGAGAAGGTGGTGGAGAAGGTAGTTGCGGCGGCGGCTTCTGTGGAGGGTATTATCGTGCGGAGGAGGAAGCAGTGTGGGGTGGAGTTGGAGGGGTGTGATGGTAATTTCGCCGCTTTGGTGGAGGTTTACCGGTTATCGGCGGAACTGGTTGTGGTTGAGGTGAGAAGGAGGGATGGGAATGGCGGAGTTTTCAGGGATGTGTGGAGCAATAAGCTTAGGCCGTATCTCTGTGCTGCCAGTAGCAGTACGACGTCGGATCGGGAGGAAACCGGTGCGCAGCCGGTTACCGGTGAATCATGA 1302 0.5384 MPEIEQAAPQSTVLFEKYEVGRLLGCGAFAKVYHARNTSTGQSVAVKVVSKKKLAATGMASNVKREIAIMSRLHHPNIVKLHEVLATKTKIYFILEFAKGGELFARIAKSRFGEDLARRFFQQLISAVGYCHARGVFHRDLKPENLLLDEQANLKVSDFGLGAVKEQMGVDGVLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVILFVLVAGYLPFNDPNLMVMYRKIYKGEYRCPRWFSTELRRFLARLLDTNPETRITVDEILKEEWFKRGYKEVTFGDLGLEWKSEGDDVKDLNAFDIISFSTGLNLSGLFDSLKEVEEGERFLLKESPEKVVEKVVAAAASVEGIIVRRRKQCGVELEGCDGNFAALVEVYRLSAELVVVEVRRRDGNGGVFRDVWSNKLRPYLCAASSSTTSDREETGAQPVTGES 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01291 433 Gene3D Transferase(Phosphotransferase) domain 1 9 297 - -
Vimu1g01291 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01291 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vimu1g01291 433 SUPERFAMILY Protein kinase-like (PK-like) 14 279 IPR011009 -
Vimu1g01291 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 391 - -
Vimu1g01291 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01291 433 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Vimu1g01291 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01291 433 Pfam NAF domain 297 348 IPR004041 GO:0007165
Vimu1g01291 433 CDD CIPK_C 299 411 - -
Vimu1g01291 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vimu1g01291 433 Gene3D Kinase associated domain 1, KA1 298 413 - -
Vimu1g01291 433 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165
Vimu1g01291 433 FunFam Non-specific serine/threonine protein kinase 8 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01291 Vimu-Chr1 10355097 10356398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01291 1 419 CBL-interacting serine-threonine protein kinases AT2G30360 61.290 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu1g01291 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01291 - - gmx:100815088 715.301