Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01280 ATGGATGATCACTTGATCTCATTCTTACCCTTTTTTCTATATTCATTGAGTTTCATCCTTTTTGTTTCAAAGTTTCTAAAAGTGAGAAACAGATCCAGAAACTCAGTGAAAACATTGAAGCTTCCCCCAGGGCCATGGAAGCTACCTGTCATTGGAAGCTTACACCACTTAGTTGGCTCTCTACCACATCATCGCTTGAGAGAACTTGCTAAAAAACATGGTCCTCTCATGCACCTACAACTTGGTGAGGTACCAACCGTTGTGGTTTCTTCTCCAGAGGTGGCTAAAGATATCATGAAAACCTATGATGTCAACTTTGCTCAAAGACCCCGTCAAATTGGTGCAGACATCATGTGTTATGGTTCCTCTGACATTGTCACCTCGCCATATGGGGGTTACTGGAAGCAACTAAGAAGAATATGCTCACAAGAGCTTCTAAGCATCGGACGTGTGAGATCATTTCGATCAATAAGAGAAAAAGAAGTGCTGAATTTAGTAAGATATATTGAGACCAATACTGGTTCTTGTGTGAACCTCAGTGAAAAAGTGGACTGCATGACAAGTGCCATCATTGGAAGGACGGCTTTTGGTGAAAAGTGTAAGGATCAACAAGAGTTCATTTCCCTTGTTAAGAAACTTGTGAAAATGGCCGAACGTTTAGCTATTTTTGACTTGTTCCCCTCTCACAAATGGCTTCATGTGATCAGTGGACAGAAACCTAAACTGGAGGAGTTGCATAGAAAATATGACATAATAATTGGAAAGATTATTAGAGAGACAGAAAAAAATATTGGTGAAGTAGAGGTCCATAGTCTCCTTTCTGTTCTTCTAAATGTTAGAAATCAAGGTGACCTCGAATATCCTTTGACAATCGATAACGTCAAGGCTGTAATGAATAATATTTTTGGTGGTGGAAGTTATACATCATCTGCAATTATAGAATGGGCAATGTCAGAGATGCTGGAAAATCCAAAAGTAATGGCCAAAGCTCAAGAAGAAGTTAGACGAGTTTTTGGTAGCAAAGGATACAGCAACGAAGAATCACTTGAGGAACTAAAATATTTGAAAGCAGTGATAAAAGAAACAATGAGATTGCATCCTCCTTTCCCTCTTCTTCATCCAAGGGAATGTAGAGAAACTTGTGAGGTAAAAGGGTATATGATACCTGCTGGGACCCAAGTGTTAGTGAATGCATGGGCAATTGCAAGAGATCCTGATTATTGGAATGATCCAGAGAAGTTTAATCCTGAGAGATTCATTGATAGTCCAATTGATTATAAAGGTTCCCATCATGAATTTATTCCCTTTGGCGCTGGAAGGAGAATATGCCCTGGCATTTCTTTTGGGGTAATTACTATTGAACTTTGTCTTGCACAATTACTTTACTATTTTAATTGGGAACTTCCAATTGGAGACAAAGAAAACCTGGAAATGGCTGAAGCTTTGGGAGCCTTCTCGAGAAGGAAAACAGATCTAGTCTTAGTTCCTGTTTCTCATAATCCTCGTCCTATTTCATCAAACCTTAATTAA 1530 0.3902 MDDHLISFLPFFLYSLSFILFVSKFLKVRNRSRNSVKTLKLPPGPWKLPVIGSLHHLVGSLPHHRLRELAKKHGPLMHLQLGEVPTVVVSSPEVAKDIMKTYDVNFAQRPRQIGADIMCYGSSDIVTSPYGGYWKQLRRICSQELLSIGRVRSFRSIREKEVLNLVRYIETNTGSCVNLSEKVDCMTSAIIGRTAFGEKCKDQQEFISLVKKLVKMAERLAIFDLFPSHKWLHVISGQKPKLEELHRKYDIIIGKIIRETEKNIGEVEVHSLLSVLLNVRNQGDLEYPLTIDNVKAVMNNIFGGGSYTSSAIIEWAMSEMLENPKVMAKAQEEVRRVFGSKGYSNEESLEELKYLKAVIKETMRLHPPFPLLHPRECRETCEVKGYMIPAGTQVLVNAWAIARDPDYWNDPEKFNPERFIDSPIDYKGSHHEFIPFGAGRRICPGISFGVITIELCLAQLLYYFNWELPIGDKENLEMAEALGAFSRRKTDLVLVPVSHNPRPISSNLN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01280 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Vimu1g01280 509 CDD CYP71-like 72 492 - -
Vimu1g01280 509 SUPERFAMILY Cytochrome P450 42 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 Pfam Cytochrome P450 42 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PANTHER CYTOCHROME P450 71B11-RELATED 23 497 - -
Vimu1g01280 509 FunFam Cytochrome P450 99A2 31 497 - -
Vimu1g01280 509 Gene3D Cytochrome P450 26 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 186 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01280 509 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01280 Vimu-Chr1 10199610 10201241 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01280 42 488 Cytochrome P450 AT3G48310 40.798 1.73e-121 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01280 - K23807 gmx:100779851 770.385