Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01275 ATGGGGAACAACAGGTTTAAGTTGTCAGATATGATGCCAAATGCTTGGTTTTACAAGCTCAAAGATATGAGCAGATCACGAAAGAGAAATGGTTCTCATGTAATGAAGAGTAAAGTATCTTCACCAACAGCATCTCAAAGGTCGGTGCCAACATATTCACACTATTGCTCCTCTGAGCCGATCAGAGCTGGTAAGCTATACAACACTCCCATTCACACCAGAGATTTGGACATGCCATTCACTGATTCACCTAGAAGGTCATCCAAGAGAAGGACTAGGAGAAAAACCATTTACAAGCCTTCTCCCACTGTTGTTTCTTCGTCTTTCATACCAACTTCCAACTATGATTCCACCAATCATTGGATCAAACCATACCAAGATCAGTCACCAGATTACGATGTGTCTTCAGTTGAAAGCTCTTCTGAATCTGATCTCCATCAATATGCTTATTCTGAGTCTGAATGTGACAGTTTTTCTGTTCCTGATTTACTTAATGGAATGGCCCCTAATGGCAGCTGTAGAGTTAGCTCTTCCACTAATGACATCATCATTGACATGAACAACGACTCCTTCCTTGGGAACTCTGAAAACCAAGATGGGTTTGATGCAATTTCACAGCTGGCTCTTGCTCCAATATTGACAAAGCCAGTGAAGTTTGATGACAAGATCATTGAAGCCACTGAGTCGAGAAGTTCAACTGAATGGGATGAGCTGCAGGATGATCAGTCTTTCTCAATTGAAATTAACAAAGAGGAAGGAAACAGAACTCAAAGGAGGAGAAAAAGCAGTCATAGAAAGCCCTTCGCTAATTCTTCTGGCATAAGGCTTAGAATCAATTCTCCAAAACTTGCTAGCAGAAAAATTCAAGCCTGTGCAAGAAGGAGTGTGTCATCCACTGCAAGCAGAGCCTTAAGGGGCACAGGCTTTCCTGATGGCTTTGCTGTTGTGAAGTCCTCATTTGATCCACAGAGTGACTTCAAGGAATCAATGGTGGAGATGATTGTGGAGAACAATATCCGAGCATCCAAAGATTTGGAGGACCTACTTGCCTGCTACCTTTCCCTTAATTCAAGTGAATATCATGATCTCATTGTTAAAGCATTTGAGCAAATTTGGTTTGACTTGGCTCAACTTAGAATGTAA 1143 0.4156 MGNNRFKLSDMMPNAWFYKLKDMSRSRKRNGSHVMKSKVSSPTASQRSVPTYSHYCSSEPIRAGKLYNTPIHTRDLDMPFTDSPRRSSKRRTRRKTIYKPSPTVVSSSFIPTSNYDSTNHWIKPYQDQSPDYDVSSVESSSESDLHQYAYSESECDSFSVPDLLNGMAPNGSCRVSSSTNDIIIDMNNDSFLGNSENQDGFDAISQLALAPILTKPVKFDDKIIEATESRSSTEWDELQDDQSFSIEINKEEGNRTQRRRKSSHRKPFANSSGIRLRINSPKLASRKIQACARRSVSSTASRALRGTGFPDGFAVVKSSFDPQSDFKESMVEMIVENNIRASKDLEDLLACYLSLNSSEYHDLIVKAFEQIWFDLAQLRM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01275 380 ProSiteProfiles OVATE domain profile. 315 374 IPR006458 -
Vimu1g01275 380 MobiDBLite consensus disorder prediction 72 95 - -
Vimu1g01275 380 Pfam DNA-binding domain 1 42 IPR025830 GO:0003677
Vimu1g01275 380 Pfam Transcriptional repressor, ovate 319 375 IPR006458 -
Vimu1g01275 380 MobiDBLite consensus disorder prediction 35 55 - -
Vimu1g01275 380 MobiDBLite consensus disorder prediction 230 271 - -
Vimu1g01275 380 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 118 376 IPR038933 GO:0045892
Vimu1g01275 380 MobiDBLite consensus disorder prediction 230 258 - -
Vimu1g01275 380 MobiDBLite consensus disorder prediction 27 55 - -
Vimu1g01275 380 NCBIfam uncharacterized plant-specific domain TIGR01568 313 376 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01275 Vimu-Chr1 10136762 10137904 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu1g01275 Ovate 7.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01275 - - gmx:100780926 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02062 2 15319399 15320544 Vimu1g01275 1 10136762 10137904 PCT