Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01273 ATGGCAGAACATTGTTATGTGGAAACTGACCCAACTGGTCGTTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGAGCAATGAAGACTGTGTACAAAGCAATTGATGAGGTTCTTGGAATTGAGGTAGCATGGAACCAAGTCAGACTCAACGAGGCCCTTCGCACTCCTGAAGATTTGCAGAGGCTTTACTCAGAGGTTCATCTCCTCAGTACCCTCAAGCATCAGTCCATCATAAGATTCTACACTTCTTGGATTGATGTTGATAACAGGGCCTTCAACTTTATCACAGAATTGTTCACATCAGGGTCACTTAGAGAATACAGGAAGAAATATGAGCGTGTCAGCATACAAGCTATAAAGAATTGGGCTCGCCAAATCTTACAAGGTCTTGTTTATCTACATGGCCATGATCCACCAGTTATCCACAGGGATCTTAAATGTGATAACATATTTGTTAATGGTCATCTTGGACAAGTAAAAATTGGTGACCTGGGACTTGCTGCAATTCTTCGTGGATCCCAATCAGCACACAGTGTCATAGGTACCCCAGAGTTCATGGCACCAGAGTTGTACGAGGAAGAATACAATGAACTTGCTGATGTGTACTCATTTGGCATGTGTGTGTTGGAAATGCTTACATCGGAATATCCATATAGTGAATGTTCTAATCCAGCCCAAATCTACAAGAAAGTGACATCGGGAAAACTACCAATGGCGTTTTTCCGGATTGAAGACATGGAAGCACAAAGGTTTATTGGAAAATGCTTGCTACCTGCAGAAAAGAGGCCTTCGGCAAAAGAATTGTTGCTTGACCCGTTTCTTGCATCTGATGATCCATCATCAACAACAAAATTTGCAATACAGAAGCCATTTTTAAATGCCACTGAGATGGAGAAACTACAATTAAATGATGATCTTCCGAGAACTGGAATGAAAGTGATAGGAAAACTGAATCCTGAAGATGATACTATCTTTCTCAAAGTACAAATTTCTGATAAGAATGGTTCTGTTAGGAATGTATTCTTTCCCTTTGACATTTTCAATGACACCCCTATTGATGTTGCAACTGAGATGGTGAAAGAGTTGGAGATTTCTGATTGGGAACCTTTTGAGATTGCAAATATGATTGATAGAGAGATATCTGCTCTGCTACCTCAGCAGAAGAGGCAAACTAGCTGTTCAGATGCCTTCCACACATTTAGTTATATAGATGATGATGATTGTGATGATAATGATGCACCTCATCATCATTTTCGCTCCTTCTCTTCAAGTTCATCATTCCAAGAATCAATGCCAGATTTTGTCAGTAAAGCTGAGGAAATATCAAGTGGATATTATTGGCTCCATGATGATTCACATGATGATACCAGTTCACGATGCTCTTCACAGGGGACATATTCCAACCTGAATTACTCTTCTGTGGATGATCATCAGGATCAGTACAATATGTCTTCTTTGAGAAAAGATAAACTTCCCATCATGAAGAGTCACTGCAAGGGCAAAAAGGTTTCCCCTGGCGAAGACTTGAGCAATTTCAACCAATGTAAATTCATGGCAGGATCACAGGTTCCTTTTACTAGTAAAAGTAAGATGATGATGAACAATCAAAGATTAACTAGGAACAGGTCATTGATTGATATAAGGAGCCAACTATTACACCGATCACTGGTTGAGGAGGTCAACAAAAGAAGGTTGTTCAAGACAGTTGGTGCTGTGGAAAATATTGGATTTCAGGCACCTTGTGATGTTACAACAAAAAGGTCACATCATGTATCTGCTGCTAGGAATGAGAACTGTTCAAGGAAGTGCAAGGGGGACAAAAATAAGAGATGA 1833 0.401 MAEHCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEALRTPEDLQRLYSEVHLLSTLKHQSIIRFYTSWIDVDNRAFNFITELFTSGSLREYRKKYERVSIQAIKNWARQILQGLVYLHGHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQSAHSVIGTPEFMAPELYEEEYNELADVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPMAFFRIEDMEAQRFIGKCLLPAEKRPSAKELLLDPFLASDDPSSTTKFAIQKPFLNATEMEKLQLNDDLPRTGMKVIGKLNPEDDTIFLKVQISDKNGSVRNVFFPFDIFNDTPIDVATEMVKELEISDWEPFEIANMIDREISALLPQQKRQTSCSDAFHTFSYIDDDDCDDNDAPHHHFRSFSSSSSFQESMPDFVSKAEEISSGYYWLHDDSHDDTSSRCSSQGTYSNLNYSSVDDHQDQYNMSSLRKDKLPIMKSHCKGKKVSPGEDLSNFNQCKFMAGSQVPFTSKSKMMMNNQRLTRNRSLIDIRSQLLHRSLVEEVNKRRLFKTVGAVENIGFQAPCDVTTKRSHHVSAARNENCSRKCKGDKNKR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01273 610 SMART serkin_6 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01273 610 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01273 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 582 - -
Vimu1g01273 610 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Vimu1g01273 610 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Vimu1g01273 610 FunFam probable serine/threonine-protein kinase WNK9 99 279 - -
Vimu1g01273 610 SUPERFAMILY Protein kinase-like (PK-like) 17 306 IPR011009 -
Vimu1g01273 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vimu1g01273 610 FunFam Probable serine/threonine-protein kinase WNK1 1 97 - -
Vimu1g01273 610 ProSiteProfiles Protein kinase domain profile. 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01273 610 CDD STKc_WNK 14 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01273 Vimu-Chr1 10130804 10135170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01273 6 586 MAP Kinase Kinase Kinase AT5G58350 60.342 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu1g01273 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01273 K08867 - gmx:100272203 1051.58