Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01269 ATGGCAATCCGTAGATATTCAATTGCAGTCCTTCTTCTCATTTCTGTGTTTGCTGGAACGCAGTTGCAGGGTGCCACTGCTATCGATCGTGGTTGGGAGGATAGCCATGCTAGTTTCTATACTGGTTCTTCTAAGACCATGGGAGGTGCATGTGGTTATGGGGATGTGATTGCAGAGGGATACGGAACTGATACTACAGCTCTAAGCAGTGCTTTGTTCAACAATGGGTTATCTTGTGGGGCATGTTTTGAAGTTAGGTGTGTTAATGACGCAAAATGGTGCAAACCTGGCACTGTTGTTGTTACTGCTACAAACTTCTGCCCTCCAGGTGGTTGGTGCAGCCCTCCTTTACAACACTTCAACTTGGCAGAATCAGCCTTTCTCAAAATTGCTCAATTCAGGGCTGGAATTGTACCTGTGCAATTTAGAAGAGTGCCTTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGACACTCTTACTTCAACCTGGTTTTGATCACCAACGTAGCGGGTGCAGGGGATGTCAATGCAGTCTCCATCCAAGGGTCCAAAACAGGGTGGCAACCCATGTCAAGGAACTGGGGGCAAAATTGGCAGAGCAACTCCTACCTCAATGGACAGAGTCTCTCTTTTCAAGTCACCACCAGTGACCGTAGAACTGTCACAAGCTACAACGTGGCACCGGCTAATTGGCAGTTTGGTCAGACCTTCGAGGGGCGTCAATTTTAG 735 0.4721 MAIRRYSIAVLLLISVFAGTQLQGATAIDRGWEDSHASFYTGSSKTMGGACGYGDVIAEGYGTDTTALSSALFNNGLSCGACFEVRCVNDAKWCKPGTVVVTATNFCPPGGWCSPPLQHFNLAESAFLKIAQFRAGIVPVQFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVNAVSIQGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDRRTVTSYNVAPANWQFGQTFEGRQF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01269 244 PANTHER EXPANSIN-A15 12 244 IPR002963 GO:0009664
Vimu1g01269 244 Gene3D - 18 147 IPR036908 -
Vimu1g01269 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Vimu1g01269 244 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vimu1g01269 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Vimu1g01269 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Vimu1g01269 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Vimu1g01269 244 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Vimu1g01269 244 Pfam Lytic transglycolase 65 142 IPR009009 -
Vimu1g01269 244 Gene3D - 151 244 IPR036749 -
Vimu1g01269 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Vimu1g01269 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Vimu1g01269 244 SMART dpbb_1 65 142 IPR007112 -
Vimu1g01269 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Vimu1g01269 244 CDD DPBB_EXPA_N 31 147 - -
Vimu1g01269 244 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vimu1g01269 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Vimu1g01269 244 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Vimu1g01269 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Vimu1g01269 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Vimu1g01269 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Vimu1g01269 244 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Vimu1g01269 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Vimu1g01269 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Vimu1g01269 244 SUPERFAMILY Barwin-like endoglucanases 31 170 IPR036908 -
Vimu1g01269 244 FunFam Expansin 152 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01269 Vimu-Chr1 10078329 10080507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01269 13 244 Expansin Gene Family AT2G40610 69.136 1.29e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01269 - K20628 gmx:100777044 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01269 1 10078329 10080507 Vimu1g01269 1 10078329 10080507 ECH
Vimu1g01269 1 10078329 10080507 Vimu3g01145 3 18632293 18633389 ECH
Vimu2g02059 2 15289942 15292211 Vimu1g01269 1 10078329 10080507 ECH
Vimu2g02059 2 15289942 15292211 Vimu1g01269 1 10078329 10080507 PCT