Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01268 ATGGCACTCCATGCATCTTCATTTGTCCTACTTATTCTCATTTTTATCCACTTAAAGGGTGCCTTTGCTGACTATGGCGGTTGGCAGGGTGGTCATGCCACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGGTATGGAAATCTGTACAGTCAGGGATATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAGCAATGGCTTGAGTTGTGGAGCATGTTTTGAAATGAGGTGTGATGATGACCCACGGTGGTGCAAGCCTGGCACCATTGTTGTGACTGCTACAAACTTCTGTCCTCCAAACTTTGCTTTGCCAAACAATGATGGTGGTTGGTGCAACCCTCCTCTACAACACTTTGATATGGCAGAACCAGCCTTCCTCCAAATTGCTCAATATAGAGCTGGAATTGTGCCAGTGGCATTTAGAAGGGTGCCCTGTGTGAAAAAGGGGGGAATAAGATTCACAATCAATGGACATTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCCGGTGCAGGGGATGTCCATGCAGTCTCCATCAAAGGGTCCAGAACTAGCTGGCAACCTATGTCTAGGAACTGGGGACAAAATTGGCAGAGCAACTCCTACCTCAATGGACAAAGCCTATCTTTTAAAGTCACCGCCAGTGATGGTAGAACTGTGACTGCCTTCAACGTGGCACCAGCTAACTGGCAGTTTGGTCAGACCTTCCAAGGGGGTCAGTTTTAG 753 0.4781 MALHASSFVLLILIFIHLKGAFADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFSNGLSCGACFEMRCDDDPRWCKPGTIVVTATNFCPPNFALPNNDGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSRTSWQPMSRNWGQNWQSNSYLNGQSLSFKVTASDGRTVTAFNVAPANWQFGQTFQGGQF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01268 250 Pfam Lytic transglycolase 63 147 IPR009009 -
Vimu1g01268 250 Gene3D - 157 250 IPR036749 -
Vimu1g01268 250 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Vimu1g01268 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vimu1g01268 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Vimu1g01268 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vimu1g01268 250 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Vimu1g01268 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vimu1g01268 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Vimu1g01268 250 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Vimu1g01268 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Vimu1g01268 250 SMART dpbb_1 63 148 IPR007112 -
Vimu1g01268 250 FunFam Expansin 16 154 - -
Vimu1g01268 250 CDD DPBB_EXPA_N 27 153 - -
Vimu1g01268 250 SUPERFAMILY Barwin-like endoglucanases 10 176 IPR036908 -
Vimu1g01268 250 FunFam Expansin 158 250 - -
Vimu1g01268 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Vimu1g01268 250 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Vimu1g01268 250 PANTHER EXPANSIN-A15 7 250 IPR002963 GO:0009664
Vimu1g01268 250 Gene3D - 17 153 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01268 Vimu-Chr1 10064033 10065937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01268 9 250 Expansin Gene Family AT2G40610 80.247 1.34e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01268 - - gmx:100816848 469.544