Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01261 ATGTTAGAAGTGGAGAGAAAGAAGGAAGAGAGTTCAATTCTGTTGGGTGACAAAACTATTAGCTTTTGGGAACAGATGCAAGATCCATCTTCAAACCCTAATTCCAATTCCAATCCCAATCCTCACAATGCCAATGCTGCATCTCAGCTACCACGACCGGCGCCGTCAACAGCGGCCACCGCCGCCGGCGCCTCCTCGTCCTCGATTTTCGCACGCTCTGGCGGGGCTCACCACCGGCGAGCTCACTCGGAGGTGAGTTTCCGGCTTCCGGACGACATGATGGACCTGTCGCCGTCGGATCCGTTTGCCGGCGGGTCATCTACGGCGAGTATGGAGGAGATCGGATCAGAGGACGACCTGTTCTCGACGTACATTGACGTGGACAAGCTGGGAGGTGCAAACGGGTCGGGCGGAGCGGGAAACGGAGCGGATCCGACCGGAGAACGGGAGAAAAGTCCGGCGAGGGCGCGGCACCGGCACAGTAGTTCCGTCGATGGCTCTTCATCTTTTGCCGAAATTATGGAAGCTAAGAAGGCTATGCCTCCTGATAAGTTAGCTGAGCTATGGACAGTTGATCCCAAGCGTGCTAAGAGAATACTTGCAAATCGGCAATCCGCTGCTCGATCTAAAGAGAGAAAAGCTCGCTATATACAAGAACTCGAACGCAAGGTTCAAACACTTCAGACCGAAGCCACAACCCTTTCTGCTCAGTTGACCTTATACCAGAGGGACACAACAGGCCTGAGTACTGAAAATACCGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAGCAAGCACAGCTTCGTGATGCTCTTAACGAAGCATTGAAAAAGGAAGTTGAGAGACTTAAAGTTGCTACTGGTGAGATGATGAGCCACACTGAATCCTTTAATTTGGGAATGCACCATATGCCGTTTACGGGATCAACTTTCAGTCCAATCCTGTCACAATCAGGTCCTTCTGGTCACCAGAACATCCAGTTGTCATCATTTGGTCACTCCCCATCAACAATGCCAACTCATCAACTGCATCAAACTAGTTCTCATACACTATCAGAAATATTGCAAAATGACCAGCTTGGTCGTTTCCAGGGGCTTGACATTAGTAGCAAAGGATCAACTCTGGTGAAGTCTGAAGGTCCCTCACTGTCTGCAAGGGAAGCACCCTTGGGGTTTTGTTGTGAAGTTCACACAATCTTGTTCAGCAAGGCATTTGGTGTTTCTGGGCGCGGGAATATCGGGAATGAAAGGTCATTCCCATTGTATCTTTGTATGTTGGGATATGCATGGATCCTCTGA 1299 0.5035 MLEVERKKEESSILLGDKTISFWEQMQDPSSNPNSNSNPNPHNANAASQLPRPAPSTAATAAGASSSSIFARSGGAHHRRAHSEVSFRLPDDMMDLSPSDPFAGGSSTASMEEIGSEDDLFSTYIDVDKLGGANGSGGAGNGADPTGEREKSPARARHRHSSSVDGSSSFAEIMEAKKAMPPDKLAELWTVDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMSHTESFNLGMHHMPFTGSTFSPILSQSGPSGHQNIQLSSFGHSPSTMPTHQLHQTSSHTLSEILQNDQLGRFQGLDISSKGSTLVKSEGPSLSAREAPLGFCCEVHTILFSKAFGVSGRGNIGNERSFPLYLCMLGYAWIL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01261 432 FunFam probable transcription factor PosF21 193 246 - -
Vimu1g01261 432 SUPERFAMILY Leucine zipper domain 194 245 IPR046347 GO:0003700|GO:0006355
Vimu1g01261 432 MobiDBLite consensus disorder prediction 132 169 - -
Vimu1g01261 432 Gene3D - 193 245 - -
Vimu1g01261 432 Coils Coil 210 237 - -
Vimu1g01261 432 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 28 356 - -
Vimu1g01261 432 MobiDBLite consensus disorder prediction 23 72 - -
Vimu1g01261 432 Pfam bZIP transcription factor 194 249 IPR004827 GO:0003700|GO:0006355
Vimu1g01261 432 MobiDBLite consensus disorder prediction 148 162 - -
Vimu1g01261 432 Coils Coil 258 289 - -
Vimu1g01261 432 SMART brlzneu 190 254 IPR004827 GO:0003700|GO:0006355
Vimu1g01261 432 MobiDBLite consensus disorder prediction 1 112 - -
Vimu1g01261 432 CDD bZIP_plant_RF2 195 244 IPR044759 GO:0003700|GO:0006355
Vimu1g01261 432 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 192 255 IPR004827 GO:0003700|GO:0006355
Vimu1g01261 432 MobiDBLite consensus disorder prediction 318 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01261 Vimu-Chr1 9955842 9958546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01261 26 372 bZIP Transcription Factor Family AT2G40620 54.830 1.55e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu1g01261 bZIP_1 7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01261 - - vun:114193127 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01261 1 9955842 9958546 Vimu1g01261 1 9955842 9958546 ECH
Vimu2g02037 2 15132785 15134141 Vimu1g01261 1 9955842 9958546 PCT