Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01259 ATGGAGCTCGATGTTTGCATGAACGGTGCTTGCAAGAATGGCTATGCGAGAGAGTGGAAGAAAGGGTGGCCTCTGCGATCGGGTGGATTCGCTAGGCTCTGCGATAAGTGCGGATCTGCATATGCCAATTCAATTTTCTGTGAAAAATTCCACCTACATCAAACTGGTTGGAGAGAGTGCAACTTTTGCAACAAGTCTATCCACTGTGGATGCATAATATCAAGGTTTTCTTTTGAGTACCTTGATTTTGGAGGTATAGGTTGCTCAACCTGTTTGAGGGCTTCTCCATTTCCTTTGATGCAGGAGAGTGGAAACTCTATTAGGTCTATTAGATCAGTAAAAAATCATGCTAGTGATCGTCATACAGAACATATTGATGATAGACTATTCCTTGATGGTTCTAGCAAAAGAAAACCTATGCACATGCGTAGAATTGTGGATGGTAGAGAATCCAGCCGTTGGCCTCAAGTTAAGAGAGATGACATACATTCCTGTATTGATCTAAACAGAGAAGAAATGAGATTTTCAAATGTGATGAAACCGTCTAATCATTCATTAAAGCTTCCTGCATTAGAAAATAACAGACCAACATGGGAGAGTAGAAGTATGCACAGATCAAGTTCAATGAATATTTCTCTGGGAGCCTCATCAGGAAACTCTGTGCTACCTTCTGCTTTAGAGATTGCAGAAGGGAGATTTGATGGTAAAACATCATCTTCTTCCTTTCATAAAGGGAAAAGACCTCTCTCCATTATGCCTAAACCATTGATGAATGCAATAAACATAAATATGGAATCAAGCAATGGAATGATTTCTCAAGAGCGTGTTGCACGGCCACCTACTGATGGGAAAGGCAAGAATATGTTACTTTCTCGATACTGGCCTAGGATTACAGACCAGGAGCTTCAGCAATTGTCCGGAGATTTGAAGTCTACTATAGTGCCTTTATTTGAGAAGGTACTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTGCCAAAATCATGCGCTGAGGCTTACTTTCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGCATATGAAAGATGTGAAGGGAAATGAGTGGACATTTCAGTTTAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGAGTAACCCCTTGCATACAGGCCTTGAAATTAAATGCTGGCGACATTGTGATATTTAGTCGAATAGATCCTGGAGGCAAATTTGTTTTGGGTTTTAGAAGGGCATCAGATTCTACAGATACACAGGTTGTGACAGATGCTTCTGCCGCTCATTCCATTGTTTTATCGACAAAGGAAACAACCTTTTCTGGTGCAACTGCAGGAAATAGTTATCATGATCTTCTCCAGACAAGGAAAGGGAATGGTGATCCTTACTTAAATAAATGTTCAGAGCATTTCCGTTTGGGTACTGGCATTGCTGAGCGTCATCGAACTGAAAATTCTGAGATGGTAAACAAAGATTTGGTGCAACTACCAATTTCAGTTTCAGAGAAGACTCAAAATATTGGACCTATGTGCAAGAGGTTGCTCATACACAATGAAGATGCCATGGAGTTGAGAGTTACATGGGAAGAAGCTCAGGACTTGCTTTGTCCAGCGCCTAGTATCAAGTCCAATATTGTAACAATTGAGGACCAAGAATTTGAGGAATATGAGGTAAGTGTGAGTGCCACTGCCATGGCTGTGCATCTTTTTATTATATTGGAACCCCCGGTCTTTGGAAAGAGAACTACAATAAATGCTCGTTCATCTGGGTCTTTGAGCTTTGCATCAGAGGAAATGAGTCCAAAGGAATTAGAAAATATTCCAGTTACCAAAAAAGGAGTTTTGGATGATGATGTTGCTGACCCTGGTGATTCATCAGCTGGAGCCACCACCGAATATCCAAGGCACCGTTCAGGATGCATTTGCATTGTGTGCATTCAATCCTCAAGTGGAAAAGGGAAACATAGCCCTCCCAGCATCACCGTGAAACGCCGTGTGGACACCCTTTTGACGCGTAAGAAGCAACGCCTTGGTACCCAGAAAGATGATGATATTTATGACGGAGATGAAGGAGATGGTGCATGTCTCTCTGAGAAAGAGGGAAACATAAACAAAGGTTGTCTTAAGAAGGGTGAACTCAGTGCAGGACAAATAGACCTGAATTGTCGTCCCGATCTCGATGAAGACATGCAAGTGGATATATGA 2217 0.4181 MELDVCMNGACKNGYAREWKKGWPLRSGGFARLCDKCGSAYANSIFCEKFHLHQTGWRECNFCNKSIHCGCIISRFSFEYLDFGGIGCSTCLRASPFPLMQESGNSIRSIRSVKNHASDRHTEHIDDRLFLDGSSKRKPMHMRRIVDGRESSRWPQVKRDDIHSCIDLNREEMRFSNVMKPSNHSLKLPALENNRPTWESRSMHRSSSMNISLGASSGNSVLPSALEIAEGRFDGKTSSSSFHKGKRPLSIMPKPLMNAININMESSNGMISQERVARPPTDGKGKNMLLSRYWPRITDQELQQLSGDLKSTIVPLFEKVLSASDAGRIGRLVLPKSCAEAYFPPISQSEGLPLHMKDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQALKLNAGDIVIFSRIDPGGKFVLGFRRASDSTDTQVVTDASAAHSIVLSTKETTFSGATAGNSYHDLLQTRKGNGDPYLNKCSEHFRLGTGIAERHRTENSEMVNKDLVQLPISVSEKTQNIGPMCKRLLIHNEDAMELRVTWEEAQDLLCPAPSIKSNIVTIEDQEFEEYEVSVSATAMAVHLFIILEPPVFGKRTTINARSSGSLSFASEEMSPKELENIPVTKKGVLDDDVADPGDSSAGATTEYPRHRSGCICIVCIQSSSGKGKHSPPSITVKRRVDTLLTRKKQRLGTQKDDDIYDGDEGDGACLSEKEGNINKGCLKKGELSAGQIDLNCRPDLDEDMQVDI 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01259 738 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 617 735 - -
Vimu1g01259 738 SMART B3_2 317 418 IPR003340 GO:0003677
Vimu1g01259 738 FunFam B3 domain-containing transcription repressor VAL1 295 422 - -
Vimu1g01259 738 MobiDBLite consensus disorder prediction 618 637 - -
Vimu1g01259 738 ProSiteProfiles B3 DNA-binding domain profile. 317 418 IPR003340 GO:0003677
Vimu1g01259 738 SUPERFAMILY DNA-binding pseudobarrel domain 314 416 IPR015300 -
Vimu1g01259 738 Pfam B3 DNA binding domain 317 417 IPR003340 GO:0003677
Vimu1g01259 738 CDD B3_DNA 315 416 IPR003340 GO:0003677
Vimu1g01259 738 Gene3D - 295 422 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01259 Vimu-Chr1 9918679 9925370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01259 3 680 B3 DNA Binding Superfamily AT4G32010 40.541 3.39e-162 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g01259 B3 4.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01259 K09287 - vra:106763363 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01259 1 9918679 9925370 Vimu1g01259 1 9918679 9925370 ECH
Vimu2g02006 2 14751401 14757798 Vimu1g01259 1 9918679 9925370 PCT