Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01258 ATGGCAACAAAGATTGCAGAATATACAGTGCATCGAATTTTATATCATGCTCAATACTTGTGTTGTTTCAACAACTTTGCTTCCAATCTTCCATATTCTAAAGAGCTATTGGAATTTACTCGAGATGAAGTGAAGGAGCGAATTAGAGAAGCCATCAATAGGATTGAAAAAGTTGAGCCAGCTGTACAGAAGTGGCTGAAAGATGTTGAAAAAGTCTTAGCAGAAGTGCAAATGCTGGAAGAAAGAATATTGAGCGTGAACAAAAGCTATTTCAGAAGGCAGTGTCAATATTCTCTTGCAAAACAAATAGAAAGAAAAACAACTGAAATGATTCAGCTCTATCGTAATAGAAAGTTTGAACCGTTTTCAAGGATTACTGAACTTGCAGGCATTAAGTACTATTCTTCCAAAGATTTTTTTATGTTCAACTCTACAGAAGTATCTTACAAGAAGCTTCAAGAAACACTAAAGAATAAAAGTGCTTCTATAATTGGATTAGTTGGATTAGGAGGGTTAGGGAAAACTACTTTGGCAAAAGAAGTAGGTAAAAAAGCTGAAGACATGAAAATCTTTGAGAAGGTTGTATGGGCAACAGTGTCTCAACCTCTAAATATCAGAACTATCCAAGATCAGATTGTTGATCAATTGTGCTTCAAGTTAATTGAAGAATCAGAAATAGGTAGAGCACAGAGACTATCAGAAAGATTAAGGAAAGGTACAACTCTGATAATCTTGGATGATGTACGGGAAAAACTAAACTTTGAAGCTTTAGGTATTCCACTTGATGAAAGCAGTAAGGCTTGTTGCGTATTGATAACTACTCGGAGTAAAGAAGTATGCACTTCTATTCAATGCCAAAGTATAATTGAACTTAATCTTTTGAGTGACGAGGAAGCTTGGACTTTGTTCAAACATTATGCAAACATAAATGATGACTCCTCAGAAGCTTTGAAAGTTGTGGCAAGAAAAATTGTTAATGAATGTAAGGGATTGCCCATTGCAATTATGATCGTGGGAAGCACACTAAAGGATACAACTCTTGAAAATTTTGAGCTAGCATTATCAAGACTAGAAATTTCAAAGTCACTAGATATTCCACAAGGCTTTAGAAGTCCTTATGTTTGTCTTGAATTAAGTTACAATAATTTGACAAACCCATTAGCTCAATCCTTATTATTGTTGTGTTCTATGTTTCCAGAGGATTGTGAAATAGATTTGGAATATTTGTTTTTTGTTAATGCATGCAAAAGAAAAATACAAGGTAAAAATGCATGA 1275 0.342 MATKIAEYTVHRILYHAQYLCCFNNFASNLPYSKELLEFTRDEVKERIREAINRIEKVEPAVQKWLKDVEKVLAEVQMLEERILSVNKSYFRRQCQYSLAKQIERKTTEMIQLYRNRKFEPFSRITELAGIKYYSSKDFFMFNSTEVSYKKLQETLKNKSASIIGLVGLGGLGKTTLAKEVGKKAEDMKIFEKVVWATVSQPLNIRTIQDQIVDQLCFKLIEESEIGRAQRLSERLRKGTTLIILDDVREKLNFEALGIPLDESSKACCVLITTRSKEVCTSIQCQSIIELNLLSDEEAWTLFKHYANINDDSSEALKVVARKIVNECKGLPIAIMIVGSTLKDTTLENFELALSRLEISKSLDIPQGFRSPYVCLELSYNNLTNPLAQSLLLLCSMFPEDCEIDLEYLFFVNACKRKIQGKNA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01258 424 FunFam Probable disease resistance protein At1g61300 135 287 - -
Vimu1g01258 424 Pfam NB-ARC domain 149 360 IPR002182 GO:0043531
Vimu1g01258 424 Gene3D - 137 290 IPR027417 -
Vimu1g01258 424 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 34 413 - -
Vimu1g01258 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 394 IPR027417 -
Vimu1g01258 424 PRINTS Disease resistance protein signature 163 178 - -
Vimu1g01258 424 PRINTS Disease resistance protein signature 235 249 - -
Vimu1g01258 424 PRINTS Disease resistance protein signature 328 342 - -
Vimu1g01258 424 Coils Coil 34 54 - -
Vimu1g01258 424 Coils Coil 62 82 - -
Vimu1g01258 424 Gene3D - 293 383 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01258 Vimu-Chr1 9892953 9894227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01258 164 342 WRKY Transcription Factor Family AT5G45050 28.125 2.42e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01258 - - vra:106763356 658.292