Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01257 ATGGATCTCCTCCTCCTGGAGAAGACCCTCCTCGGCCTCTTCCTAGCGGCGGTGGTTGCCATTGTTGTCTCCAAGCTCCGCGGCAAGCGCTTCAAGCTGCCGCCGGGCCCAGTTCCCGTCCCTATCTTCGGCAACTGGCTCCAGGTTGGCGATGACCTCAACCACCGTAACCTCACTCAACTCGCCAAGCGCTTCGGCGACATCTTCCTCCTCCGCATGGGGCAGCGCAACCTGGTCGTGGTTTCCTCACCGGACCTCGCCAAGGAGGTGCTGCACACGCAGGGCGTGGAGTTCGGCTCCCGCACCCGCAACGTCGTGTTCGACATCTTCACCGGCGAGGGCCAGGACATGGTCTTCACCGTCTACGGCGAGCACTGGCGCAAGATGCGACGCATCATGACCGTGCCCTTCTTCACCAACAAGGTCGTCCAGCAGTACCGCCACGGTTGGGAGGCCGAGGCCGCCGCCGTTGTGGACGACGTGAGGAAGAATCCCGAAGCGGCCGTCTCCGGCCTGGTCATCCGCCGAAGGCTCCAGCTCATGATGTACAACAACATGTACCGCATCATGTTCGACCGGAGATTCGAGAGCGAGGAGGACCCTCTGTTCCAGCGTCTGAAAGCGCTGAACGGCGAGAGGAGTCGCTTGGCTCAGAGCTTTGAGTATAACTATGGCGATTTCATTCCCATCTTGAGACCCTTCTTGAAGGGTTACTTGAAGATTTGCAAGGAAGTGAAAGAAACCAGGTTGAAGCTTTTCAAGGATTACTTCGTCGACGAGAGGAAGAATATTGGAAGCACGAAGAGCACTAACAACGAAGGACTTAAATGTGCTATTGATCACATTTTGGATGCTGAGAAAAAGGGCGAGATCAACGAAGACAACGTGCTTTACATTGTTGAGAACATCAACGTTGCTGCTATTGAAACAACTCTGTGGTCAATTGAATGGGGTATTGCTGAGCTTGTGAACCATCCAGAGATTCAGCAGAAAGTGAGGGATGAAATTGACAGAGTTCTTGGAGTAGGGCATCAGGTGACTGAGCCAGATATCCAAAAGCTTCCATACCTTCAAGCAGTGGTGAAGGAAACCCTTCGCCTCAGAATGGCAATCCCTCTCCTTGTCCCACACATGAACCTCCACGATGCTAAGCTTGGTGGCTTTGACATCCCAGCTGAAAGCAAGATTTTGGTGAATGCATGGTGGCTGGCGAACAACCCTGCACACTGGAAGAAGCCAGAAGAGTTCAGGCCTGAGAGGTTCTTCGAAGAGGAATCGCATGTGGAAGCGAATGGCAATGACTTCAGGTACCTTCCCTTTGGTGTTGGGAGAAGAAGCTGCCCCGGAATCATTCTTGCATTGCCCATTCTTGGCATCACTTTGGGACGTTTGGTCCAAAACTTTGAGCTCTTGCCTCCCCCTGGGCAGTCCCAGATTGACACCAGTGAGAAAGGAGGACAGTTTAGCTTGCACATACTAAAGCATTCCACCATTGTTGCAAAGCCAAGTGGAATTGCTTTTGCTCGAATTATAAGTATCAAGATCAGCCTAAGCATGACGGCAGTTACAATTCGGAAGCCTTTCGTGATGGACGTGGCAAAGGGGGTAATTCTTCCTCTCGAGACTATGCCAGATTTTATGGTAGACGAGGGTATCAATCTAAAGGTGTATGCATGA 1677 0.5247 MDLLLLEKTLLGLFLAAVVAIVVSKLRGKRFKLPPGPVPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAAAVVDDVRKNPEAAVSGLVIRRRLQLMMYNNMYRIMFDRRFESEEDPLFQRLKALNGERSRLAQSFEYNYGDFIPILRPFLKGYLKICKEVKETRLKLFKDYFVDERKNIGSTKSTNNEGLKCAIDHILDAEKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQQKVRDEIDRVLGVGHQVTEPDIQKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSQIDTSEKGGQFSLHILKHSTIVAKPSGIAFARIISIKISLSMTAVTIRKPFVMDVAKGVILPLETMPDFMVDEGINLKVYA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01257 558 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 503 - -
Vimu1g01257 558 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Vimu1g01257 558 FunFam Trans-cinnamate 4-monooxygenase 23 497 - -
Vimu1g01257 558 SUPERFAMILY Cytochrome P450 34 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 CDD CYP73 63 496 - -
Vimu1g01257 558 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 Gene3D Cytochrome P450 20 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g01257 558 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01257 Vimu-Chr1 9880784 9884850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01257 1 502 Monolignol Biosynthesis Gene Families AT2G30490 85.060 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01257 K00487 - gmx:100499623 933.324