Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01248 CTATCCGTTTCGATGTCTGTTTCTGGAATTCCTTTTTCGCGTCTGAACGGTGTACTAGCAATCATGGCGGATGAAACACAAAATGAACTGAAGGAGGAGATTCCAGAAATTGTACCCTTTGACCCTACCAAAAAGAAGAAGAAAAAGAAAAATACAATTATAGATCCTGCTGATGACCCCGTGGAGAAATTGGCTGAGAAGACGGAAAACCTCACAGTTTCTGATGGGGTTGAGGCTGCATTTACTGGTTTGAAAAAGAAAAAGAAGAAGCCTGTTGAAATGAGTAACTTGAATGATGAGAGCGGAGATGCCGTTGAAGATTTGGATGATCATGCTGAAGACGATGAAGGAGAAATGGTTGCTCCTCAGGCTCGTTATCCTTGGGAAGGGAGTGATCGAGATTATGAATACGAGGAGCTTCTTGGCAGAGTGTTTAACATTCTTCGTGAGAATAATCCTGAACTTGCTGGAGATAGGCGAAGGACAGTAATGAGGCCTCCTCAGGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTTATGGATCTGTGCAAAACAATGCATCGGCAGCCTGACCATGTCATGGCTTTCTTGCTGGCTGAGTTGGGTACGAGTGGATCGCTTGACGGACAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGAAGATATGTCAATGAGTATGTCATTTGCCTTGGATGCAAGAGCCCGGATACTATACTTACGAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAAAAGTGTGGATCAGGAAGATCGGTTGCTCCAATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGAAGGAACACGGGAACATAA 870 0.4448 LSVSMSVSGIPFSRLNGVLAIMADETQNELKEEIPEIVPFDPTKKKKKKKNTIIDPADDPVEKLAEKTENLTVSDGVEAAFTGLKKKKKKPVEMSNLNDESGDAVEDLDDHAEDDEGEMVAPQARYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILTKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01248 289 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 238 273 IPR016190 GO:0003743|GO:0006413
Vimu1g01248 289 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 134 241 IPR016189 GO:0003743|GO:0006413
Vimu1g01248 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 138 288 IPR045196 GO:0003743|GO:0006413
Vimu1g01248 289 Pfam Domain found in IF2B/IF5 158 267 IPR002735 GO:0003743|GO:0006413
Vimu1g01248 289 Gene3D - 132 274 - -
Vimu1g01248 289 SMART eIF2Bneu4 159 268 IPR002735 GO:0003743|GO:0006413
Vimu1g01248 289 FunFam Eukaryotic translation initiation factor 2 subunit 132 274 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01248 22 287 Eukaryotic Initiation Factors Gene Family AT5G20920 77.323 2.14e-139 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01248 K03238 - gmx:100783618 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01248 1 9790081 9794066 Vimu1g01248 1 9790081 9794066 ECH