Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01247 ATGTCCGTACACTCAACACTAAACCTCCACCCCATCAACCCCGCCACTCCAAATTCCAATTTTGATGACAACCCACCGAGGAAAACCAAGACCAAAACCCAAAGGAGGCTCCTTCGTATCATAGTCACCGACCACGACGCCACTGATTCTGACTCCGACCACGAACAACCACAAAACAACCCAACAACCAGGAAACTCAAGAGAGAAATTACCCAAATCAGCATGCACCTTCCTCTCCCGGATAACTCCCTTTCTTCTTCTTCCTATTCTTCTGGTTTAGCTTCTGCTTCCTCTTGTTCCTCCGAACAAGTCTCAAAGTGCAGAAGGCCCAAAAAACCTCCACCACCCTCCGAAGCGGCCCGACGCCGCACCAAGTTCCGAGGCGTCCGTCAGCGGCCGTGGGGGCGATGGGCCGCCGAGATCCGCGACCCGACCCGCCGGAAACGCCTCTGGCTCGGAACATTCGACACGGCGGAGGAAGCCGCCACAGAGTACGACAAAGCCGCCGTCAAACTCAAGGGTCCCAACGCCGTTACCAATTTCCCCCTCACAACGCCGCCCCCAGTGGCGGAGTCTCCTTTCGCCGCCATCGACAGCCTCAGCACCGACGGCGGCGCGTCGTACTCCGACTTGGTGGCCTCGCCGACGTCCGTTTTGACCTACGACTGCGACTCGACGCCGTTCGACAGTTACCATTACGGCGACGTGGACGCGCTCGGGTTCCACATCGACGCGCCGTTAAGACTGGCGGACGTTGACGTCTCGCTTACGTGTCATCCCTATAAGGAGGAGGGAGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGAATGTGAAAGTTGAAATTCCGAATATGCCCTTCTCGGTGTTGGAGTTTGAAATTTTGTCGTACTCGTTGGATCTTTGGAAGAGTGTAGAGTTGTAG 927 0.5577 MSVHSTLNLHPINPATPNSNFDDNPPRKTKTKTQRRLLRIIVTDHDATDSDSDHEQPQNNPTTRKLKREITQISMHLPLPDNSLSSSSYSSGLASASSCSSEQVSKCRRPKKPPPPSEAARRRTKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLTTPPPVAESPFAAIDSLSTDGGASYSDLVASPTSVLTYDCDSTPFDSYHYGDVDALGFHIDAPLRLADVDVSLTCHPYKEEGEAFDEFDLDEFMNVKVEIPNMPFSVLEFEILSYSLDLWKSVEL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01247 308 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Vimu1g01247 308 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Vimu1g01247 308 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Vimu1g01247 308 MobiDBLite consensus disorder prediction 105 124 - -
Vimu1g01247 308 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 192 - -
Vimu1g01247 308 MobiDBLite consensus disorder prediction 78 104 - -
Vimu1g01247 308 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Vimu1g01247 308 MobiDBLite consensus disorder prediction 1 24 - -
Vimu1g01247 308 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Vimu1g01247 308 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Vimu1g01247 308 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Vimu1g01247 308 MobiDBLite consensus disorder prediction 1 65 - -
Vimu1g01247 308 MobiDBLite consensus disorder prediction 37 62 - -
Vimu1g01247 308 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Vimu1g01247 308 MobiDBLite consensus disorder prediction 78 130 - -
Vimu1g01247 308 PIRSF PTI6 7 281 IPR017392 GO:0003700
Vimu1g01247 308 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01247 Vimu-Chr1 9756645 9757634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01247 27 230 AP2-EREBP Transcription Factor Family AT4G27950 42.925 5.87e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu1g01247 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01247 K13434 - gmx:100817278 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01247 1 9756645 9757634 Vimu1g01247 1 9756645 9757634 ECH
Vimu2g01995 2 14659922 14661738 Vimu1g01247 1 9756645 9757634 PCT