Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01234 ATGAGAGTTGAAGGTGTAAGATCATTTGACTACAAAGAAATGGCCTTGGCCACAAACAATTTTAACCAGTCTGCTCAAATCGGAGAAGGAGGCTATGGGAAGGTTTATAAAGGACGTCTTCCTGATGGCACAGTTGTTGCCATAAAACGTGCACAGGAGGGTTCACTGCAAGGTGAGAGGGAGTTCTTTACAGAAATAGAATTGTTGTCAAGGCTACACCATCGCAACCTTGTGTCTCTGATTGGATACTGTGACGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAATGGAACTCTAAGGGATCATCTTTCTGCTCATTCAAAAGATGTTCTTAGCTTTTCTCTGAGGTTAAAGATTGCTCTAGGATCAGCAAAAGGTCTTCTATATCTGCACACAGAAGCTAATCCTCCTATATTCCACCGAGACGTGAAGGCCAGCAATATACTGTTGGACTCTAGGTACACAGCAAAAGTTGCTGATTTTGGACTTTCACGTCTTGCTCCAGTTCCAGATATTGAAGGAAATGTACCTGGTTATGTATCCACAGTAGTAAAGGGGACCCCGGGTTATCTTGATCCAGAGTACTTCTTAACTCGTAATTTGACCGATAAAAGTGATGTTTATAGTTTGGGTGTTGTATTTCTGGAACTTTTGACTGCTAGGCCACCAATCTTTCATGGTGAAAATATTATTAGACAGGTTAATATGACATACCAATCTGGTGGAATATCTCGAGTGGTTGATAAACGTATTGAGTCTTACCCATCTGAGTATGCAGAGAGATTTTTGACTTTAGCCTTAAAGTGTTGCAAAGATTCACCAGATGAGAGACCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAATACATCTGTTCTATGTTACCCGATTCAGATACCAAGGGAGCTGAATATATTAAAAGTGATTCTTCTGGTACAATGTTCAGTTCAGAAGCTTCATCATCTATTATAAAGACTCCTTTTATTTCAGGAGATGTCTCAGGTAGTGACCTTGTCAGTGGAAGCATACCAACCATCAAACCAAGATAG 1056 0.4044 MRVEGVRSFDYKEMALATNNFNQSAQIGEGGYGKVYKGRLPDGTVVAIKRAQEGSLQGEREFFTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSAHSKDVLSFSLRLKIALGSAKGLLYLHTEANPPIFHRDVKASNILLDSRYTAKVADFGLSRLAPVPDIEGNVPGYVSTVVKGTPGYLDPEYFLTRNLTDKSDVYSLGVVFLELLTARPPIFHGENIIRQVNMTYQSGGISRVVDKRIESYPSEYAERFLTLALKCCKDSPDERPKMAEVARELEYICSMLPDSDTKGAEYIKSDSSGTMFSSEASSSIIKTPFISGDVSGSDLVSGSIPTIKPR 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01234 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Vimu1g01234 351 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 8 309 - -
Vimu1g01234 351 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 97 306 - -
Vimu1g01234 351 PIRSF ILK 1 305 - -
Vimu1g01234 351 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Vimu1g01234 351 CDD STKc_IRAK 27 291 - -
Vimu1g01234 351 SUPERFAMILY Protein kinase-like (PK-like) 6 303 IPR011009 -
Vimu1g01234 351 FunFam Leucine-rich repeat protein kinase family protein 1 96 - -
Vimu1g01234 351 SMART serkin_6 21 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01234 351 ProSitePatterns Protein kinases ATP-binding region signature. 27 49 IPR017441 GO:0005524
Vimu1g01234 351 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
Vimu1g01234 351 ProSiteProfiles Protein kinase domain profile. 21 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01234 351 Pfam Protein kinase domain 22 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01234 Vimu-Chr1 9660568 9663229 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01234 5 303 Receptor kinase-like Gene Family AT5G01950 65.886 1.30e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vimu1g01234 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01234 - - gmx:100777308 630.172