Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01233 ATGGAGGAGTTTTTTCTTTCCATCGCAACAAAGATTGCAGAATATGCAGTGCATCCAATTTTACATCATGCTCAATACTTATGTTGTTTCAACAACTTTGCTTCCAATCTTCCAAAAGCCAAAGAACAATTGGAATTGACTCGAGATGGAGTGAAGGAGCGAATCAGAGAAGCCATCAATAGGGTTGAAAAAGTTGAGCCAACTGTTGAGAAGTGGCTGAAAGATGTTCAAAAAGTCTTAGAAGAAGTGCAAATGCTGGAAGAGAGAATATTGAGCCTGAACAAAAGCTATTTCAGAAGGCAATGTCAATATTCTTTTGCAAAAGAAATAGAAAAAAAAACAACTGAAATGATTCAGCTCCATCGTAATAGCAAGTTTAAACCCTTTTCGAGGATTACTGAACTCCCAGGAATGCAGTACTATTCTTCCAAAGATTTCTTTATGTTCAACTCTACAGAAGCATCTTACAAGAAGCTTCTAGAAGCATTAAATAACAAAAGTGCTTTCATAATTGCATTAGTTGGATTAGGAGGGTCAGGGAAAACTACTTTGGCAAAAGAAGTGGGTAAAAAAGCTGAAAAGATGAAACTCTTTGAGAAGGTTGTCTTCGCAACAGTGTCTCAACCTCTAAATATAAGAAGTATCCAAGATCAGATTGCTGACCAATTGAGCATTGAGTTAAAGGAAGCATCCGAAATAGGTAGAGCACAAAGACTATCGGAAAGATTAAGGAAAGGTACAACACTTTTAATCTTGGATGACATATGGGAAATTCTAAACTTTGAAGCTTTAGGTATTCCGCTTGATGAAAGCAGTAAGGCTTGTTGTGTATTGATAACTACTCGAAATAAAGAAGTATGCACTTCTATGCAATGCCAAAGTACAATTGAACTTCATCTTTTGAGTGACGAGGAAGCTTGGACTTTGTTCAGACGTTATGCAAACATAACTGATGACTCCTCAGAAGCTTTGAAAGGTGTGGCAAGAAAAATTGTTAATGAATGTAAGGGATTGCCCATTGCAATTGTGACCGTGGGAAGCACGCTAAAGTATAAAATTATTGCAAATTTTGAGTCAGCATTGTCAAGGCTACAAAATTCTAAGCCACCACATATTCCAGAAGGCTCAACAAGTCCTTATGTTTGTCTTGAATTAAGTTACAAAAATTTGACAAACCCATTAGCTCAATCCTTATTATTGTTGTGTTCTATGTTTCCAGAGGATTGTGAAATAGATTTGGAAGATTTGTTTCGATTTGGAAGGGAATTTGACATAATTGGGACGATGTTTGGAACGATGGAGAACGCAAGGAGAGAGATGGATGCAGCTATTGACATGCTCAAGAATTGTTTTTTGTTAATGCATGCAAAAGAAAAACAAAGGGTAAAAATGCATGATTTAGTTCGTGATGTGGCGTTGTGGATTGCGTCTAAAAGTGGTAAAGCAATTTTCACTCGTACTGAAGTGGACCCAAGAGCTTTGGCAGATGATGAAACCCTGAAAGATAGGAAAGCAATAGCCGTATGGGGTTTGAAAAATTATGATGTTCTCAATTATACAATAAACCGTCCAATACTTGAAACTCTCTTGCTTTCTTTTTATGTGACTGGTGGCGTAAAAGTATCAGATGGGTGTCTTCAAAGCTTGGAAAACCTTAAAACCTTAGCAATCTTAAACTCAGTTTGGTGGAAGCACGATGCATTGCCTTTGCAAGAGTCATTGAAGTCATTAAAAAACCTTCGAACACTATGCTTGAGGGGTTTTGATTTAGGTGACATATCTTTTGTGGAAGGCTTGCAAGCACTTGAGATTCTTGACTTACGTGGCTCTTATTTTGATGATTTGCCTATTGGGATTGTAGAATTAAAGAAGTTGAGGCTTTTGGATTTGTACGAATGTCGTATTATGAAAGATAAAAATGTTGAATTTTACGAAAATGTGGGAAAATGTTTGCAGCTTGAGGAATTGTATTTGTATTTGAGGTATTGTAGAAAGCCCTCTCCACGTGATGTCTCTCTCTCCAGATTACAAAGGTATGTTATAGAAACTGGTCGTTCTGATTATGAAACTGTTCGTTCTGATAGTGATACTACACAGCTTATGAAAAAATATGGACAACCTAGAAGTTTAATAATGAATTGGTTTGATGTTGCTCCTCAAAGTTTTATATCATTACCAATCAAGGATCTATTTATAAGAGCAGAGTTCCTTTGTTTGAAGGACCTTAGGGAAGATTATAAAAATATAATCCCATCCATGGATCCACAAGGCATGAATCAGTTGATTGCCCTGACACTCTATAATGGTTCAGTTGAATGTCTCGTTGATAGCACTGAAAAGGATAAAACTGAAGTAATTGCATTCTCCTCGCTTGTTTACTTAAGTTTGGTAGGCATATATAGCCTTCGAGAGGTGTTTTGTGATCCCTCTTCGCGATGTTCTCTCAAAAATTTACAAGAGCTCAAGATACAAAATTGTGGTGAATTATATAGCATATCCTTTCCAAGGAACTCAAAGCTATGCAATCTGAAGGTTCTTTCAATATCTGAATGCCCAATGCTAACTTGTCTCTTCACGTCATCCGTTGTCCAAACTCTAGAGCTCTTAGAGGATCTAAGAATATATTGCTGTACATCATTGAGACACATAATTGAAGAAGAGAATGATGTTCTTTCAAACACTCAAAGTCATTCTTCTTTGAAGCTCCCAAAATTAAGGAATATTGATATTATTGAATGTGATAATTTGGAGTATGTGTTCTCTGTGGTTTTATTCGAAGGGCTTTCAAATTTGGAATGTGTGAATATTCGTTCCAACCCAAAGTTGAAGTATGTATTTGGTAGTGAAAAGGAACATAATGTTGCAGGGTACCCAAGTTTCCAGCAGACTAATACGATAACAAATTTGTTTAATTTGAATACTCTGGAGTTGAGGGTTTTACCAAATCTAATTGCCATTTGGCCTGAATATTGTCAAGCACATCTCCCCAGTCTTAATGATTTTTATTATCATCGTTGTCCAAAATTGTCCATACATAAGGTGTTGAATGCTTCATATATCCAGCAACAGACAACTCCAACGGAGAATGGAATAGTATGGTTGATTACCAACACACTCATCCAATTGGAGGATGATCCATTGTCTCACCCCCAACTCAAAGTTTTCCTCAAATTTAGAAGACTAAACTTGAGTGATTTTAGAATAAAAGGTATCTTCCAATTCCAAATGGGAGAACAAGGGGGCACTACAGAATTGCTTCCCCTAAACTTGGATATAAAGTATCTAAGATTGCGGTCTCTACCTGAGCTCAACTTCATATGGAAGGGTCCCACAGGTTTTCTAAGCCTCCAAAACCTTAACGAATTTTGCGTGGTTGGATGTCCAAAATTGAAAACCATCTTCTCCACCACAGTTGTTACAAGTTTGCCACGACTGACATATCTGTATATAAGTAACTGTGATGAATTGGAACAAATATTTGATTTAGGTGATGCACATCAACTCAATACCCTATATTCCTCCCAACAAGTCTGCTTCCCAACACTCTCAAGTATTACAGTTCATAAGTGCAATAAGTTGAAATATCTATTTTATAATCTCTCGGCTAGTCATTTTATCTGTCTGAGATATTTAACAATAGAAGAGTGCTCTCAGTTACACAAGGCTTTTGCATTTAGTGAAGAAGAGATGGGTAAGGATGGAAAACAAGTACTATTACAGAACTTGAAAGATATAACACTCATAAATTTGCCAAACTTGAAAGAGATTCACCACGGATTTAAGTTGAAAGAAGACGTGAAACAAATAATAAAGGAATGTCCTATATATTCTCCAAGTTTATATCTACATCAAGGTAAAATTCACATG 3867 0.3646 MEEFFLSIATKIAEYAVHPILHHAQYLCCFNNFASNLPKAKEQLELTRDGVKERIREAINRVEKVEPTVEKWLKDVQKVLEEVQMLEERILSLNKSYFRRQCQYSFAKEIEKKTTEMIQLHRNSKFKPFSRITELPGMQYYSSKDFFMFNSTEASYKKLLEALNNKSAFIIALVGLGGSGKTTLAKEVGKKAEKMKLFEKVVFATVSQPLNIRSIQDQIADQLSIELKEASEIGRAQRLSERLRKGTTLLILDDIWEILNFEALGIPLDESSKACCVLITTRNKEVCTSMQCQSTIELHLLSDEEAWTLFRRYANITDDSSEALKGVARKIVNECKGLPIAIVTVGSTLKYKIIANFESALSRLQNSKPPHIPEGSTSPYVCLELSYKNLTNPLAQSLLLLCSMFPEDCEIDLEDLFRFGREFDIIGTMFGTMENARREMDAAIDMLKNCFLLMHAKEKQRVKMHDLVRDVALWIASKSGKAIFTRTEVDPRALADDETLKDRKAIAVWGLKNYDVLNYTINRPILETLLLSFYVTGGVKVSDGCLQSLENLKTLAILNSVWWKHDALPLQESLKSLKNLRTLCLRGFDLGDISFVEGLQALEILDLRGSYFDDLPIGIVELKKLRLLDLYECRIMKDKNVEFYENVGKCLQLEELYLYLRYCRKPSPRDVSLSRLQRYVIETGRSDYETVRSDSDTTQLMKKYGQPRSLIMNWFDVAPQSFISLPIKDLFIRAEFLCLKDLREDYKNIIPSMDPQGMNQLIALTLYNGSVECLVDSTEKDKTEVIAFSSLVYLSLVGIYSLREVFCDPSSRCSLKNLQELKIQNCGELYSISFPRNSKLCNLKVLSISECPMLTCLFTSSVVQTLELLEDLRIYCCTSLRHIIEEENDVLSNTQSHSSLKLPKLRNIDIIECDNLEYVFSVVLFEGLSNLECVNIRSNPKLKYVFGSEKEHNVAGYPSFQQTNTITNLFNLNTLELRVLPNLIAIWPEYCQAHLPSLNDFYYHRCPKLSIHKVLNASYIQQQTTPTENGIVWLITNTLIQLEDDPLSHPQLKVFLKFRRLNLSDFRIKGIFQFQMGEQGGTTELLPLNLDIKYLRLRSLPELNFIWKGPTGFLSLQNLNEFCVVGCPKLKTIFSTTVVTSLPRLTYLYISNCDELEQIFDLGDAHQLNTLYSSQQVCFPTLSSITVHKCNKLKYLFYNLSASHFICLRYLTIEECSQLHKAFAFSEEEMGKDGKQVLLQNLKDITLINLPNLKEIHHGFKLKEDVKQIIKECPIYSPSLYLHQGKIHM 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01233 1289 PRINTS Disease resistance protein signature 620 636 - -
Vimu1g01233 1289 PRINTS Disease resistance protein signature 242 256 - -
Vimu1g01233 1289 PRINTS Disease resistance protein signature 170 185 - -
Vimu1g01233 1289 PRINTS Disease resistance protein signature 335 349 - -
Vimu1g01233 1289 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1091 1196 - -
Vimu1g01233 1289 Coils Coil 41 61 - -
Vimu1g01233 1289 FunFam Probable disease resistance protein At1g61300 141 295 - -
Vimu1g01233 1289 Gene3D - 139 297 IPR027417 -
Vimu1g01233 1289 Gene3D Ribonuclease Inhibitor 504 679 IPR032675 -
Vimu1g01233 1289 SUPERFAMILY RNI-like 1055 1224 - -
Vimu1g01233 1289 Gene3D Ribonuclease Inhibitor 709 1029 IPR032675 -
Vimu1g01233 1289 SMART AAA_5 167 311 IPR003593 GO:0016887
Vimu1g01233 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 401 IPR027417 -
Vimu1g01233 1289 Gene3D - 300 386 IPR042197 -
Vimu1g01233 1289 Pfam NB-ARC domain 155 368 IPR002182 GO:0043531
Vimu1g01233 1289 SUPERFAMILY L domain-like 463 1169 - -
Vimu1g01233 1289 Gene3D Ribonuclease Inhibitor 1037 1230 IPR032675 -
Vimu1g01233 1289 Coils Coil 69 96 - -
Vimu1g01233 1289 Gene3D - 387 473 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01233 Vimu-Chr1 9653823 9658100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01233 156 489 WRKY Transcription Factor Family AT5G45050 24.561 2.31e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01233 - - vra:106778921 1798.87