Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01230 ATTGCCACAGTGATTGTTACCTCTCCAAGTTCAGGGATAAGCAAAGGAGCACTGGCTGGAATAGTCTTGGGTGCAATTGCCTTTGTAGTTACTTTTTCTGCAATTGTTACTATTCTCGTTCTGAGAATACGTTTGAGAGATCATCCTACACCTTCCAAACGGTCAAAAGCATCTAGGATCCCAATAAAAATTGAAGGTATAAGATCATTTAACTACGAAGACATGGCTGGCGCTACGAACAATTTTAGTGACTCAGCTCGAATTGGACAAGGTGGGTATGGTGAGAAGGAGTTTCTTACAGAAATAGAGTTGCTATCAAGGCTACATCACCGCAACCTTGTGTCTCTGATTGGATACTGCGATGAAAAGGGTGAACAGATTTTGGTTTATGAATACATGCCAAATGGAACGCTAAAAGATCACCTCGCTAAGCACAAAGTCACTACTGGTTTTTCTTTTATAGAGAAAACACGTCTTTCTTGTTGTCTCTCTGAACTATGCACTCAATGTTTTATGACAGTTTATTCAGAAAAACCTCTTAGTTTTTCGATGAGGTTGAAGATTGCTCTAGGATCAGCTAAAGGTCTTCTGTATCTACACACGGAAGTAGATCCTCCAATATTCCACCGAGATGTCAAGGCCACCAATATATTATTGGACTCCAAGTTCACAGCGAAAGTTGCTGACTTTGGACTTTCACGACTTGCCCCTGTCCAAGATACAGAAGGAAACATGCCTGGTCATGTATCTACTGTTGTAATGGGGACTCCGGGTTATATCGATCCAGAGTACTTCTTAACCCACAAATTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTAGAACTTGTGACTGGGAGGCCAGCAATCTTTCATGGCGAAAATATTATTAGACAGGTATAG 912 0.4079 IATVIVTSPSSGISKGALAGIVLGAIAFVVTFSAIVTILVLRIRLRDHPTPSKRSKASRIPIKIEGIRSFNYEDMAGATNNFSDSARIGQGGYGEKEFLTEIELLSRLHHRNLVSLIGYCDEKGEQILVYEYMPNGTLKDHLAKHKVTTGFSFIEKTRLSCCLSELCTQCFMTVYSEKPLSFSMRLKIALGSAKGLLYLHTEVDPPIFHRDVKATNILLDSKFTAKVADFGLSRLAPVQDTEGNMPGHVSTVVMGTPGYIDPEYFLTHKLTDKSDVYSLGVVFLELVTGRPAIFHGENIIRQV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01230 303 Gene3D Transferase(Phosphotransferase) domain 1 157 303 - -
Vimu1g01230 303 SUPERFAMILY Protein kinase-like (PK-like) 57 295 IPR011009 -
Vimu1g01230 303 PANTHER OS01G0750732 PROTEIN 7 294 - -
Vimu1g01230 303 Gene3D Phosphorylase Kinase; domain 1 81 133 - -
Vimu1g01230 303 SMART serkin_6 82 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01230 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vimu1g01230 303 ProSiteProfiles Protein kinase domain profile. 7 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01230 303 Pfam Protein tyrosine and serine/threonine kinase 95 289 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01230 Vimu-Chr1 9633847 9635889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01230 4 303 Receptor kinase-like Gene Family AT5G01950 51.077 3.15e-94 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vimu1g01230 PK_Tyr_Ser-Thr 4.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01230 - - gmx:100785752 425.246