Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01227 ATGGCAAAGGGTGGCACAATCAACACTTATGAAGAGGCTAGAAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAGATCACAAGTTCTGCAAAGAAGTCAGGGCATCATGTTCATAAACTGAAATCAAAGAAGTCAAATGGTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGAAACCCAGTTCCTTCATACAGGGAAGATGTGAGTATACACCTTCCAGCTTTGCGGAAGAGATCAATATCTTCAACACGGGGAAGTTACACTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTTTATGCTCTGGAGGCTGCGGAGGCACTCCAAATCAATTTGAACTCTTCAAATCCCTCATTTATCAAGTCGATGCTTTGGTCTCACGTTTATAGGGGCTTTTGGTTGGGTCTTCCTTCTAAATTTTGTGAGGAACATTTTCCAAAAACAGTGTGTGACATGGTTTTAGAAGATGAAAACGGCTCAGAATACAAGGCTGTTTACATAGGCAACAAAAGTGGACTTAGCGGTGGTTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTAATTGAACCATCGAGATTTAAGATTTATATTGTAAGAGCATTTCCAAATTTGGTTGAAGAAAAGGGAAATGATATTTTAGTTGGAGAAGAAAATATGCATGCAACTAAAGTACGGAAAGCAAAATGTAATCTCGAGTCAGAATCCAAGAGTAAAAAGCCAAGACGAGCAGCCACATGTGAAACTAATGAATCAGAGAGTTCTCAGGAGCATTTAGACAAAGAAGTCAAGCCACAGGGTGTAAATCCAACTAAGCAAACTAAAATCTCCAAGAAAAAAACACAAAAGAAATCTATACTTTTGGCTACTACAGATTTGAAAGGGAAAGTGCAATTGAAAACTGAGACAAGGAAGTCAAAGGGTATCAAGGGAATTCACGACTCAGACAGGTTAGAGAAGAAAATTTGTCTTCATGATGCTGATAACAAGTTAGAAAAGAAGATGGCAAAGGGTCGCACAAACAACACTTACGAAGATGCTAGAAAACAGAGACTTGAAGAAAATAAAAAGAGGTTTGAGGATTTGGGAATTTTAAAGATTTCAAAAAATTTGACGGAGATCACAAGTTCTGGAAAGAAGACACGGCATCATGTTCCTAAACTAAAATCAAAGAAATCAAATACTGAAGTGGAACCTAGGCGATCTTCTCGTGTGCGTAACCCAGTTCCTTCATACAGGGAAGATGTGAGCGAATACCTTCCATCTTTGAGGAAGAGGTCAAGATCAAATTCTTCAACATGGGGAAGTTACATTGCGAGGCCTTTAGATGAAATCAAAGAAGCCTCAAAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCAGAAGAACTCCAAATCAATTTGAAGTCTTCAAATCCCTCATTTATCAAGTCAATGGTTCGGTCTCACGTCTATAGCTGCTTTTGGTTGGGTCTTCCGTCTAAGTTTTGTGAGGAACATCTTCCAAAAACTGTACATGACATGGTTTTAGAAGATGAAAATGGTTCAGAATACCAGGCTGTTTACATAGGCAACAGAGCTGGATTAAGCGGAGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGATTGAAGCATCGAGATTTAAGATTTATATTGTTAGAGCTTTTCCAAGTTTAGTTGAAGAAAAGGGAAATGATATTTTAGTTGAAGAAGGAAATAAGCATGCAACCAAAGTACCGAAAACTAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAGACAGGAAAAATATGAAACTAGTGAATCAGAGAGTTCTCAGGAGCATATTGACAAAGAAGTCAAGTCACAGGGTGCAAATCCATTGAAGCAAACTAAAATCTCTAAGGAAAAAACGCAAAAGAAATCAATACTTTTGGCTACTACAGATTCGAAAGGGAAAGTGCAATTGAAAACTGAGGAACCAATGTTGTCTCTAGTGCTGTCAAAGAAGACAAGGAAGTCAAAGGGTATCAATGGAATTGATGACTCAGGCAAGTTAGAGAAGAAAATTTGTGTTCATGATGCTGATAGCAAGTTGGAAAAGGTTGAAGAAGCAAGCAAATGTGTGGCGCATCTTGGGAGGTATTTGGGTGTAGGGACAATTGTGCATATCACACCACTAGGGATATTGATAAATGGATTGATGAATTCTAGACTTGGTAGATGTGGTCTCCCACATTTACCACAGGCCCACCATTCACTGACGGCACCATCACCCACCCGTTGCTTTTCCGATGAACTTGCAGTCCGCTTATGTCGAATACCTTCATTGGATCATTTACCGAGGGAAGCGAGTAAGTTTGGAGCAAAAGGTATAACTGGGTTGTGA 2484 0.3937 MAKGGTINTYEEARKQRLEENKKRFEDLGISRISKNLTEITSSAKKSGHHVHKLKSKKSNGEVEPRRSSRVRNPVPSYREDVSIHLPALRKRSISSTRGSYTARPLDEIKEATEEERLYALEAAEALQINLNSSNPSFIKSMLWSHVYRGFWLGLPSKFCEEHFPKTVCDMVLEDENGSEYKAVYIGNKSGLSGGWRAFALDHKLDDGDALVFELIEPSRFKIYIVRAFPNLVEEKGNDILVGEENMHATKVRKAKCNLESESKSKKPRRAATCETNESESSQEHLDKEVKPQGVNPTKQTKISKKKTQKKSILLATTDLKGKVQLKTETRKSKGIKGIHDSDRLEKKICLHDADNKLEKKMAKGRTNNTYEDARKQRLEENKKRFEDLGILKISKNLTEITSSGKKTRHHVPKLKSKKSNTEVEPRRSSRVRNPVPSYREDVSEYLPSLRKRSRSNSSTWGSYIARPLDEIKEASKEERLCALEAAEELQINLKSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVHDMVLEDENGSEYQAVYIGNRAGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRAFPSLVEEKGNDILVEEGNKHATKVPKTKCNLESESKTKKPRQEKYETSESESSQEHIDKEVKSQGANPLKQTKISKEKTQKKSILLATTDSKGKVQLKTEEPMLSLVLSKKTRKSKGINGIDDSGKLEKKICVHDADSKLEKVEEASKCVAHLGRYLGVGTIVHITPLGILINGLMNSRLGRCGLPHLPQAHHSLTAPSPTRCFSDELAVRLCRIPSLDHLPREASKFGAKGITGL 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01227 827 ProSiteProfiles B3 DNA-binding domain profile. 138 229 IPR003340 GO:0003677
Vimu1g01227 827 MobiDBLite consensus disorder prediction 402 435 - -
Vimu1g01227 827 CDD B3_DNA 499 590 IPR003340 GO:0003677
Vimu1g01227 827 ProSiteProfiles B3 DNA-binding domain profile. 501 592 IPR003340 GO:0003677
Vimu1g01227 827 MobiDBLite consensus disorder prediction 614 654 - -
Vimu1g01227 827 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 238 591 IPR044837 -
Vimu1g01227 827 MobiDBLite consensus disorder prediction 258 292 - -
Vimu1g01227 827 Coils Coil 8 28 - -
Vimu1g01227 827 CDD B3_DNA 136 227 IPR003340 GO:0003677
Vimu1g01227 827 MobiDBLite consensus disorder prediction 40 74 - -
Vimu1g01227 827 SUPERFAMILY DNA-binding pseudobarrel domain 131 227 IPR015300 -
Vimu1g01227 827 MobiDBLite consensus disorder prediction 614 667 - -
Vimu1g01227 827 SMART B3_2 501 592 IPR003340 GO:0003677
Vimu1g01227 827 SMART B3_2 138 229 IPR003340 GO:0003677
Vimu1g01227 827 Pfam B3 DNA binding domain 501 589 IPR003340 GO:0003677
Vimu1g01227 827 Pfam B3 DNA binding domain 138 226 IPR003340 GO:0003677
Vimu1g01227 827 SUPERFAMILY DNA-binding pseudobarrel domain 496 590 IPR015300 -
Vimu1g01227 827 MobiDBLite consensus disorder prediction 258 308 - -
Vimu1g01227 827 Gene3D - 112 229 IPR015300 -
Vimu1g01227 827 Gene3D - 476 592 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01227 Vimu-Chr1 9599469 9612182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01227 371 591 B3 DNA Binding Superfamily AT5G58280 53.571 1.17e-69 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g01227 B3 2.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01227 - - vra:106764146 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01227 1 9599469 9612182 Vimu1g01227 1 9599469 9612182 ECH