Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01213 ATGGTTGAAGCCGGAAACATGGTCATTTCCATACAAGTTCTGAGGAATGCCATGGACAACTTCAGTGAGAAGAACATATTGGGACAAGGAGGTTTTGGAACGGTTTATAGAGGTGAGCTCTATGATGGTTACTGCATGGACGGGAATAAGAAGCGGCTTGTGTATGAGTACATGCCTCAAGGAACGTTGAGTAGGCATCTTTTCAACTGGCTAGAGGAAGGACAAGAACCACTGGAGTGGAACAAAAGATTGACGATTGCCTTAGATGTGGCAAAGGGTGTCGAGTACCTACATGGCTTCACCCATCAAAGCTTCATACACAACGACTTAAAACGTTCAAACATTCTCCTTGGAGATGATATGAGGGGCAAAGAAGGAAAAGCCTCTATAGACACAACAATTGCACGAACATTTGGATACTTGGCACCTGATGAGAAGAACATATTGGGACAAGGAGGTTTTGAAACGGTTTATAGAGGTGAGCTCTATGATGGTACAAGAATAGAAGTGAAACGAATGGGGTATGGGGCAATAACAGGGAAGGGTGCAGCAGAATTCAAGTCTGAAATTGTTGTTTATACAAAAGTTCACCATCTGCATGTTGTGGCTCTTCTAGGTTATGGCTTGGAAGGGAATGAGAAGTTGCTTGTGTATGAGTGCATGCCTCAAGGAACGTTGAGGAGGCATCTTTTCAACTGGCCAGAGGAAGGACTAGAACTAGAGTGGAACAGAAGATTGATGATTGCCTTAGATGTGGCAAAGGGTGTCGAGTACCTCCATGGCTTGACCCATCAACGCTTCATACACAGGGACTTAAAACCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTGCTGATTTTGGTCTTATGCGTCTTTCTCTGAAAGGAAAAGCCTCTATAGAGACAAAAAATGCACGAACTTTTGTATACTTGGCACTTGAGTATGCAAGTATCACTTAG 969 0.4345 MVEAGNMVISIQVLRNAMDNFSEKNILGQGGFGTVYRGELYDGYCMDGNKKRLVYEYMPQGTLSRHLFNWLEEGQEPLEWNKRLTIALDVAKGVEYLHGFTHQSFIHNDLKRSNILLGDDMRGKEGKASIDTTIARTFGYLAPDEKNILGQGGFETVYRGELYDGTRIEVKRMGYGAITGKGAAEFKSEIVVYTKVHHLHVVALLGYGLEGNEKLLVYECMPQGTLRRHLFNWPEEGLELEWNRRLMIALDVAKGVEYLHGLTHQRFIHRDLKPSNILLGDDMRAKVADFGLMRLSLKGKASIETKNARTFVYLALEYASIT 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01213 322 ProSiteProfiles Protein kinase domain profile. 143 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01213 322 FunFam Os07g0541700 protein 221 311 - -
Vimu1g01213 322 Gene3D Transferase(Phosphotransferase) domain 1 221 321 - -
Vimu1g01213 322 Pfam Protein tyrosine and serine/threonine kinase 147 317 IPR001245 GO:0004672|GO:0006468
Vimu1g01213 322 Pfam Protein tyrosine and serine/threonine kinase 43 121 IPR001245 GO:0004672|GO:0006468
Vimu1g01213 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vimu1g01213 322 PANTHER OSJNBA0070M12.3 PROTEIN 1 43 - -
Vimu1g01213 322 SMART serkin_6 143 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g01213 322 SUPERFAMILY Protein kinase-like (PK-like) 7 144 IPR011009 -
Vimu1g01213 322 SUPERFAMILY Protein kinase-like (PK-like) 146 320 IPR011009 -
Vimu1g01213 322 Gene3D Transferase(Phosphotransferase) domain 1 42 136 - -
Vimu1g01213 322 Gene3D Phosphorylase Kinase; domain 1 137 219 - -
Vimu1g01213 322 Gene3D Phosphorylase Kinase; domain 1 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01213 Vimu-Chr1 9478466 9479739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01213 147 319 Trihelix Transcription Factor Family AT1G70460 47.126 1.02e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu1g01213 PK_Tyr_Ser-Thr 2.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01213 K00924 - gmx:100305404 283.108